PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca55188.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

YABBY

Protein Properties

Length: 105aa MW: 11943.4 Da PI: 10.2753

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca55188.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	132.1	7.1e-41	18	76	112	170
YABBY 112 vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Dca55188.1 18 ERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 76 3459*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.8E-39	13	76	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-8	16	69	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.7E-5	23	70	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MASSRSPSPS VTNISTEERV VNRPPEKRQR VPSAYNQFIK EEIQRIKANN PEISHREAFS 60 TAAKNWAHFP HIHFGLMLET NNNHANKLDE GTQKQLPTTA LLNNL

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021760782.1	5e-52	axial regulator YABBY 5-like isoform X1
Swissprot	Q8GW46	4e-43	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0K9QZA0	3e-50	A0A0K9QZA0_SPIOL; Uncharacterized protein
STRING	XP_010687959.1	2e-49	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-45	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]