PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca55361.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 245aa MW: 28068.8 Da PI: 5.6353

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca55361.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.3	1e-19	48	91	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+++l++++++lG++ W++Ia++++ gRt++++k++w++ Dca55361.1 48 RGAFTEWEEDQLIQLHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 91 89******************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-9	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.13E-19	11	89	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.89	43	97	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-22	45	98	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-18	47	95	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-18	48	91	IPR001005	SANT/Myb domain
CDD	cd00167	5.12E-13	50	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIQCWRTV PKLADLKRGA FTEWEEDQLI 60 QLHARLGNRW SKIASHFPGR TDNEIKNHWN TRIKKKLKLL GIDPLTHVPI EPRNDSCSME 120 SISLKQTELF KQEQLQETYA PTELFEIQNE KLIESLSTNK LSYNTILENV GIVCPSINQE 180 TNVILSGGSH SGSITREDTL RHYTSGNTLV KQESMNQWVE SVNSMISWDG FNGIEDELLF 240 LTDAD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-16	12	97	2	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-16	12	97	2	105	C-Myb DNA-Binding Domain
1msf_C	1e-16	12	97	2	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011045215.1	8e-81	PREDICTED: myb-related protein 315
Swissprot	P81394	2e-59	MYB15_ANTMA; Myb-related protein 315
TrEMBL	A0A2P2NLI7	5e-79	A0A2P2NLI7_RHIMU; Uncharacterized protein
STRING	POPTR_0001s36220.1	4e-79	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	2e-61	myb domain protein 40

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]