PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca55362.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 265aa    MW: 30602.3 Da    PI: 9.4221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca55362.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000399122123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 +kC++C+ksF    +L +H  + H
  Dca55362.1  99 WKCGYCKKSFYAEKYLDNHFDNrH 122
                 58*****************76666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.699124IPR007087Zinc finger, C2H2
PROSITE patternPS000280101122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGNWMFFICP LLFFFSISLP SPSSQDLVHG MHTRKGEHSH EVHCSRERSR AAWKVIDEYL  60
MPFVEKEKYQ ISKKCKLHPD NDMFRDQEQH KIHHDVNDWK CGYCKKSFYA EKYLDNHFDN  120
RHSNLLNNTK GNCLADLCGA LHCDLVMDSQ PRKTKCNPAA AVKNRHFCEK LAGNCFPVSG  180
GPSASRLHEF FLRQFCDAHT CSGGVKPFSK GGKRHTNVFY IAISVLILML LPIFYGFVYM  240
YQRGLKTSTQ DLRRVSQTGR KKKPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021771000.11e-147uncharacterized protein LOC110735150 isoform X1
TrEMBLA0A0K9QQL81e-147A0A0K9QQL8_SPIOL; Uncharacterized protein
STRINGVIT_14s0219g00070.t011e-130(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-111C2H2-like zinc finger protein