PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca55367.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARF
Protein Properties Length: 636aa    MW: 69655.6 Da    PI: 7.5309
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca55367.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23132233199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +++ l
  Dca55367.1 132 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGVTWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGDL 226
                 89****************************986445444..8999*********************************************..4488889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r 
  Dca55367.1 227 CVGIRRP 233
                 ****985 PP
2Auxin_resp112.15.3e-37302383383
  Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 + a+++++FevvY+Pr+st+eF vk++ v++a++v++++GmRfkmafetedss++++ +Gtv++ + +dp++W+nS+Wr+L+
  Dca55367.1 302 SLAASGQPFEVVYYPRSSTPEFFVKASAVKAAMQVQWCPGMRFKMAFETEDSSRISWfMGTVSSAQVADPIHWSNSPWRLLQ 383
                 67899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-38124238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-30127232IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-22131232No hitNo description
SMARTSM010192.9E-22132234IPR003340B3 DNA binding domain
PfamPF023628.5E-22132232IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183132234IPR003340B3 DNA binding domain
PfamPF065071.2E-31302383IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MINVMNPSSE TMKEGGESCL DPQLWHACAG GMVQMPAVNS KVFYFPQGHI EHAQVKIDLK  60
NYPKLPPLVP CRVSKIKYLA EQGTDEVYTK ITLLPLRGND FDFCDDGFVV GCNSNASSNG  120
NDIDGTDKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TILAKDVHGV  180
TWKFRHIYRG TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AENGDLCVGI RRPKRGIGGG  240
PECPSGWNSG GCGSSYGAFL RDDDGSKMLR NFNGMTTGSS NGGGVGVLNS KVKAESVIEG  300
ASLAASGQPF EVVYYPRSST PEFFVKASAV KAAMQVQWCP GMRFKMAFET EDSSRISWFM  360
GTVSSAQVAD PIHWSNSPWR LLQVAWDEPE LLQNVKRVNP WLVELVATMP TIHMSPFSPP  420
RKKLRLPHQN PDFPFGDQLP LPTFPSISNT LGHCSSPVFG LPDMVPAGIQ AARRSQFGHF  480
MSDLHLNKSN PTTQFTNNFL AKPQTRENLS TFLTMTTSTS SDNNTRKKDD TKAPFMLFGK  540
PILTEQQISE TSADSTRSTV SNGTLDSSSE GGYPGHDDHD RTKLELGSGP GKVAMDEQSI  600
GRSLGLSALG SYEELYKKIA QHVWQDKVRE AEQCAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-762040451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021775111.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLM4QSA70.0M4QSA7_CAMSI; Auxin response factor
STRINGXP_010693393.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]