PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca55379.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 1407aa MW: 155984 Da PI: 4.6206

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca55379.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	448	470	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 kC++C+++F+ k++L +H+ + H Dca55379.1 448 KCHKCSTPFNEKDELLKHLIScH 470 8******************9955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.369	447	475	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.54	447	470	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	449	470	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.076	492	514	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	494	514	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1407 aa Download sequence Send to blast
MASATVGPSP PPPPSDHLTV ESIPTVDLRR LTQSELAALA LCSSRAVDLR RCDDVVIPKI 60 DRSVFNESAG SRKQTYSRLR LAPRNNPNLI DSAAAAAAKP RRVTPEPPVL DAEHAENLRI 120 VSLFKSLFNL SNGVDVSSND DVENHDGCGG GGGDELALVP VSVTYCDTVP GDKKRKRGRK 180 PKSETSLEMT VFEEKKAEDE AAEVEVMEEE EEEEDEETAE EVAAVTVEEV QRRWEESEKE 240 LVNKNGVVVN LAELAKAEDP YTVELKRLTE GKETAEELLG FVNDLEGEWG SRRKKRKIVD 300 ANLIGDFLPN GWKILIAIKK KQGRAWVFCR RYVRLFLPSF RLSSPNGRYF VSCKEVSSYL 360 ISLTGSQEPK EQPAVEDPDI TAVDVASKNA VETETKVEHQ AIPDSSLFND REDRHMHLNI 420 SPNLENRVTP SKDVQLGEVH ELSTSALKCH KCSTPFNEKD ELLKHLISCH KRKRRKAGVY 480 IENDDLLKDG KYECQFCDKV YLDRGSYFGH VGIHVKNYLK SAGGSSSVKA KQNTFKPVSI 540 GEVSLSVSET LGSTELIAES GAGTQNMLGN GELNNDCIEK KMTAPDAERL SENEKNDHSS 600 YTRPMELNAA QTDKTLDCES SGKQEAADHI ANKNTTEVDC TNKNTTEVDC PGSDKVVLDY 660 SDNYQEIISS EFVSPEAIER PPVVAENSEA YLSSDSKLSD FGADSSFVTE NVLETEERLT 720 SEFDLAAGNE GKSSNQSFAK CYLVNNPVER YCYDEEVNVM HHQGLTEVSG SGHIDVDMVD 780 EDDIKGLESM EESSAVPFTA EESCGVIMNK TENIESKVST LSDDQQTKTL MVNKRHDFAD 840 LVNETEVDLS SFENTELTDD YERIIQERHC ESNVQFYSKD NVSNYSSNEA VRGSNVKMVQ 900 PSGVRDFQQF KHSCSTENNT GEVLNKQGEE HTGNLFFLSR SRDSHLDTTD ITNTDQSHNH 960 VPDVLRYVDD KQAQVSKSLF YALSMNEHSR EVAMNDVGNV STSTTTMHLP ELEKVDSSRS 1020 SNLLLDFNNI TEMNGNFLSS AQHGAVPEET SPFQLWGQQS NGLVDSQTKV YGGGSTFLQQ 1080 ARASQNNSLN LVGHQRQSTE GYNLNEVCMN EQRYGQRNKL GVFSRNNEAR TEGISHGNAL 1140 NLAGYQQQCD LGYNLNKPCI SQQSYGVQHT ESGSYNHLNQ ARQDRVAYGN SLSLASVQQC 1200 DSRYSLNKTR DQQPVDTGYS LNKGYVDSRD RDLMIGFGNS GGRRNQTGTT DFLWGSNDGS 1260 ILPGGLVDSS SSQAQSSGSF QPFDFLSDKS GNDLYNANGK FDNMSSFEGL RSSVEPMEFS 1320 FMTPQESNPQ LEHPKVLQYN TEINQSFGSW DQKTTTLPNM MPNHVVSVMC VWCGNEFHQD 1380 SLSCEMQAGS IGSLCPSCKA RMSGQFL

Sequence ? help Back to Top

Protein Sequence Length: 1407 aa Download sequence Send to blast

MASATVGPSP PPPPSDHLTV ESIPTVDLRR LTQSELAALA LCSSRAVDLR RCDDVVIPKI  60
DRSVFNESAG SRKQTYSRLR LAPRNNPNLI DSAAAAAAKP RRVTPEPPVL DAEHAENLRI  120
VSLFKSLFNL SNGVDVSSND DVENHDGCGG GGGDELALVP VSVTYCDTVP GDKKRKRGRK  180
PKSETSLEMT VFEEKKAEDE AAEVEVMEEE EEEEDEETAE EVAAVTVEEV QRRWEESEKE  240
LVNKNGVVVN LAELAKAEDP YTVELKRLTE GKETAEELLG FVNDLEGEWG SRRKKRKIVD  300
ANLIGDFLPN GWKILIAIKK KQGRAWVFCR RYVRLFLPSF RLSSPNGRYF VSCKEVSSYL  360
ISLTGSQEPK EQPAVEDPDI TAVDVASKNA VETETKVEHQ AIPDSSLFND REDRHMHLNI  420
SPNLENRVTP SKDVQLGEVH ELSTSALKCH KCSTPFNEKD ELLKHLISCH KRKRRKAGVY  480
IENDDLLKDG KYECQFCDKV YLDRGSYFGH VGIHVKNYLK SAGGSSSVKA KQNTFKPVSI  540
GEVSLSVSET LGSTELIAES GAGTQNMLGN GELNNDCIEK KMTAPDAERL SENEKNDHSS  600
YTRPMELNAA QTDKTLDCES SGKQEAADHI ANKNTTEVDC TNKNTTEVDC PGSDKVVLDY  660
SDNYQEIISS EFVSPEAIER PPVVAENSEA YLSSDSKLSD FGADSSFVTE NVLETEERLT  720
SEFDLAAGNE GKSSNQSFAK CYLVNNPVER YCYDEEVNVM HHQGLTEVSG SGHIDVDMVD  780
EDDIKGLESM EESSAVPFTA EESCGVIMNK TENIESKVST LSDDQQTKTL MVNKRHDFAD  840
LVNETEVDLS SFENTELTDD YERIIQERHC ESNVQFYSKD NVSNYSSNEA VRGSNVKMVQ  900
PSGVRDFQQF KHSCSTENNT GEVLNKQGEE HTGNLFFLSR SRDSHLDTTD ITNTDQSHNH  960
VPDVLRYVDD KQAQVSKSLF YALSMNEHSR EVAMNDVGNV STSTTTMHLP ELEKVDSSRS  1020
SNLLLDFNNI TEMNGNFLSS AQHGAVPEET SPFQLWGQQS NGLVDSQTKV YGGGSTFLQQ  1080
ARASQNNSLN LVGHQRQSTE GYNLNEVCMN EQRYGQRNKL GVFSRNNEAR TEGISHGNAL  1140
NLAGYQQQCD LGYNLNKPCI SQQSYGVQHT ESGSYNHLNQ ARQDRVAYGN SLSLASVQQC  1200
DSRYSLNKTR DQQPVDTGYS LNKGYVDSRD RDLMIGFGNS GGRRNQTGTT DFLWGSNDGS  1260
ILPGGLVDSS SSQAQSSGSF QPFDFLSDKS GNDLYNANGK FDNMSSFEGL RSSVEPMEFS  1320
FMTPQESNPQ LEHPKVLQYN TEINQSFGSW DQKTTTLPNM MPNHVVSVMC VWCGNEFHQD  1380
SLSCEMQAGS IGSLCPSCKA RMSGQFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	180	DKKRKRGRKP
2	470	475	KRKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021740226.1	0.0	uncharacterized protein LOC110706595
TrEMBL	A0A0K9RTD1	0.0	A0A0K9RTD1_SPIOL; Uncharacterized protein
STRING	XP_010676391.1	0.0	(Beta vulgaris)