PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca55533.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 235aa MW: 27117 Da PI: 7.2428

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca55533.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.3	3.6e-10	4	77	18	99
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p ++++ + ++ s+ l+ d+ r W v + +++ + +++GW +F+ ++L+ gDf+vF++ +s f ++v+vf++ Dca55533.1 4 IPVAYVKQLDAPP-HSVVLVTDDQPLRHWVVIV--IGGR--H-FQDGWLDFCLHHRLQLGDFLVFTH--QSHFVFHVSVFDA 77 7888887776664.5555555666669999999..4443..3.89*******************5..478888*9986 PP
2	B3	43.5	5.9e-14	140	220	6	87
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 ++ + ++++l+lp++f+++ g+ ++s ++l de+g W++kl +++ + l++GWk+F a++ + +v F+l++ Dca55533.1 140 ITRASIARSWLYLPREFMRSSGLGMKRSCNIKLIDEKGIPWQMKL--SNSTVGlAHLSSGWKDFQTAHNFRPQSVVRFQLIEA 220 5667788999*********777778999***********..7777777889********************9873 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.11	1	78	IPR003340	B3 DNA binding domain
SMART	SM01019	0.089	1	78	IPR003340	B3 DNA binding domain
CDD	cd10017	4.39E-10	4	76	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.3E-9	4	77	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-11	4	76	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.9E-13	133	226	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.08E-15	133	226	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.068	135	231	IPR003340	B3 DNA binding domain
SMART	SM01019	9.8E-10	137	232	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.6E-11	139	221	IPR003340	B3 DNA binding domain
CDD	cd10017	2.36E-11	147	221	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MQAIPVAYVK QLDAPPHSVV LVTDDQPLRH WVVIVIGGRH FQDGWLDFCL HHRLQLGDFL 60 VFTHQSHFVF HVSVFDAVTA CLRRFSSSQS EHEHEHVHLH VQEQEQVQEQ EQVQVQVQVQ 120 LQEQEQVQEQ EQGISCYVTI TRASIARSWL YLPREFMRSS GLGMKRSCNI KLIDEKGIPW 180 QMKLSNSTVG LAHLSSGWKD FQTAHNFRPQ SVVRFQLIEA GRIPVLKCLQ VISPK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	4e-17	B3 family protein