PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca55618.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GATA
Protein Properties Length: 152aa    MW: 16253.2 Da    PI: 9.1938
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca55618.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.2e-194276135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                Cs C+tt+TplWR gp g+ktLCnaCG++y kk++
  Dca55618.1 42 CSDCQTTTTPLWRGGPAGPKTLCNACGIKYHKKRR 76
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.0E-153695IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.9933671IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-123777No hitNo description
Gene3DG3DSA:3.30.50.106.9E-164176IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.03E-124176No hitNo description
PROSITE patternPS0034404267IPR000679Zinc finger, GATA-type
PfamPF003201.9E-164276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEVKEDCSLS ESQSCSSISS CGSGSGNDNG NSNSNNGEVK KCSDCQTTTT PLWRGGPAGP  60
KTLCNACGIK YHKKRRALLG IAKGKVDKCK KKPNNNNNNI INNSNNNNNN NNNNNIMKIK  120
VMSCGMRQSD KVGEVEQAAL LLMALSYGSV YA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684625.16e-45PREDICTED: GATA transcription factor 15 isoform X1
TrEMBLA0A0K9QSF52e-34A0A0K9QSF5_SPIOL; Uncharacterized protein
STRINGXP_010684625.12e-44(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-25GATA transcription factor 16