PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca55626.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

ERF

Protein Properties

Length: 164aa MW: 18421.6 Da PI: 10.6434

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca55626.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.4	2.4e-20	64	114	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r+++ +g+W+AeIrdp++ r++lg+f t+eeAa+a+++ ++k++g Dca55626.1 64 TQYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEEAARAYDNEARKIRG 114 58******.******954...4***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.53E-31	64	123	No hit	No description
SMART	SM00380	9.2E-40	65	128	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.8E-33	65	123	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-22	65	123	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.723	65	122	IPR001471	AP2/ERF domain
Pfam	PF00847	1.0E-12	65	114	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.8E-12	66	77	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.8E-12	88	104	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0034059	Biological Process	response to anoxia
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MCGGAILANL IPRNQNGVVL GSEFWPCPTN DDSFFSISTS SNKRSLSSSG GVQERKRPKK 60 PRKTQYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTPEE AARAYDNEAR KIRGKKAKVN 120 FPNEPESHYN SNNNSKFTEN AVGFNAVGAL LYANGLETYR FDHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-22	65	124	14	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	60	ERKRPKKP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269\|PubMed:12913152}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021862620.1	5e-61	ethylene-responsive transcription factor ERF073-like isoform X1
Swissprot	O22259	3e-36	ERF71_ARATH; Ethylene-responsive transcription factor ERF071
Swissprot	Q6K7E6	1e-34	ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBL	A0A0K9R980	1e-59	A0A0K9R980_SPIOL; Uncharacterized protein
STRING	XP_010684330.1	2e-54	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47520.1	8e-36	ERF family protein

Publications ? help Back to Top
Kim CY, et al. Identification of rice blast fungal elicitor-responsive genes by differential display analysis. Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4 [PMID:10755311] Koo SC, et al. OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33. Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70 [PMID:19607808] Iwamoto M,Takano M Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice. Biotechnol. Lett., 2011. 33(1): p. 173-8 [PMID:20872166] Serra TS, et al. OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Mol. Biol., 2013. 82(4-5): p. 439-55 [PMID:23703395] Jisha V, et al. Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PLoS ONE, 2015. 10(6): p. e0127831 [PMID:26035591] Lourenço TF, et al. The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant Physiol., 2015. 169(3): p. 2275-87 [PMID:26381316] Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474] Eysholdt-Derzsó E,Sauter M Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling. Plant Physiol., 2017. 175(1): p. 412-423 [PMID:28698356] Eysholdt-Derzsó E,Sauter M Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis. Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108 [PMID:29996004]