PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca55710.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HB-other

Protein Properties

Length: 326aa MW: 36871.7 Da PI: 6.525

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca55710.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.4	1.8e-06	70	126	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ + ++++F + +s++e +e+ + gLt +qV+ +F +R++ +k Dca55710.1 70 KRPRDLLNPKAMKYMQAVFSIKDAISKKESREIGALFGLTVTQVREYFASQRTRVRK 126 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.203	67	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-7	69	128	IPR009057	Homeodomain-like
SMART	SM00389	5.8E-4	69	131	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-6	70	135	IPR009057	Homeodomain-like
CDD	cd00086	9.17E-5	70	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MELMMKDYPS ELEIGASMAS FLNSMESQKQ LFHRQIDQLR DIVVTQCKLT GVNPLSQEMA 60 AGALSIKIGK RPRDLLNPKA MKYMQAVFSI KDAISKKESR EIGALFGLTV TQVREYFASQ 120 RTRVRKIVRI SREKALRASA TKELQDGVSA DVDPMLAVDE PVPLKSMGPL TAEEAPSCSN 180 QDEVLPGLDE FDKQFVENIF RLMSKEETFS GRVKLMEWIL RVENPSVFSW FLSKDGVMIL 240 DSWLTDAASE EQTSVLSVVL KVFCHLPLHQ ALPVHMSVLL QGVNRLRFYR TPGGFYSFSI 300 FPMHPGNSLL ALEQEVSLFL QFIHDY

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849184.1	1e-154	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-114	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0K9RS10	1e-153	A0A0K9RS10_SPIOL; Uncharacterized protein
STRING	XP_010684371.1	1e-153	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-116	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]