PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca55786.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 825aa    MW: 89680.3 Da    PI: 6.6422
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca55786.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.8e-1843100457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                   ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Dca55786.1  43 YVRYTAEQVEALERVYAECPKPSSFRRQQLIRECpilsNIESKQIKVWFQNRRCREKQ 100
                 5789****************************************************97 PP
2bZIP_120.11.4e-06941391863
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 rr+R++ k+e  +L++   +L a Nk L +e+++l+k+v++l +e+
  Dca55786.1  94 RRCREKQKKESSQLQTVNRKLAAMNKLLMEENDRLQKQVSQLVNEN 139
                 9****************************************98876 PP
3START131.88e-421813542173
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v  ++    +e+l+d++ W +++++ e+      g  g+++l++++ 
  Dca55786.1 181 IAEETLAEFLSKATGTAVDWVQMPGIKPGPDSVGIFAISHRCSGVAARACGLVSLEPS-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELIYTQI 278
                 68999*****************************************************.7777777777***********999999999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                 +a+++l+p Rdf+++Ry+ +l+ g+ v++++S++   +++ +++++Rae+l Sg+li+p+++g+s +++v+h +l+
  Dca55786.1 279 YAPTTLAPaRDFWTLRYSTTLENGSVVVCERSLTGSGPNNPTPQFIRAEMLASGYLIRPCDGGGSIIHIVDHLNLE 354
                 **********************************9999888********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.12737101IPR001356Homeobox domain
SMARTSM003892.6E-1439105IPR001356Homeobox domain
SuperFamilySSF466896.42E-1641105IPR009057Homeodomain-like
CDDcd000861.01E-1542102No hitNo description
PfamPF000465.1E-1643100IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-184497IPR009057Homeodomain-like
CDDcd146861.48E-694133No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-498147No hitNo description
PROSITE profilePS5084820.977171354IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-17179354IPR023393START-like domain
SMARTSM002343.5E-30180380IPR002913START domain
SuperFamilySSF559617.55E-32181357No hitNo description
PfamPF018526.9E-39181355IPR002913START domain
PfamPF086709.2E-49681824IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MATMTMQYRE SSSGSSGGRG GGGGGGKGRM NNHTAAAGDA GKYVRYTAEQ VEALERVYAE  60
CPKPSSFRRQ QLIRECPILS NIESKQIKVW FQNRRCREKQ KKESSQLQTV NRKLAAMNKL  120
LMEENDRLQK QVSQLVNENG FMRQQLHTAP TVATDGSCES VVTTSQHSRK DSNNPAGLLA  180
IAEETLAEFL SKATGTAVDW VQMPGIKPGP DSVGIFAISH RCSGVAARAC GLVSLEPSKI  240
AEILKDRPSW FRDCRSLEVF TMFPAGNGGT IELIYTQIYA PTTLAPARDF WTLRYSTTLE  300
NGSVVVCERS LTGSGPNNPT PQFIRAEMLA SGYLIRPCDG GGSIIHIVDH LNLEALRYIR  360
QIAQETSGEV VYGLGRQPAV LRTFSQRLSR GFNDAINGFS DDGWTLLNCD GAEDVIVACN  420
SAKSLMASSN GVNSLPVVGG VLCAKASMLL QNVSPAVLIR FLREHRSEWA DFSVDAYSAS  480
ALKANAYALP GMRTTRFTGS HIIMPLGQTI EHEEMLEVIR LEGHSLTPEE AYMSRDIHLL  540
QICAGIDENA VGACSELVFA PINEMFPDDA PLLPSGFRII PLDSKPEIAT NRTLDLTSSL  600
DVGPSTNPSI SNTATSTRSV LTIAFQLPFE SNLQENVATM ARQYVRSVIA SVQRVAMAIT  660
PSGLAPAVGP KLSPGSPEAV TLAHWICRSY SCHMGTELLR TSSGVDDTVL KNLWHHPDAI  720
LCCSLKSLPV LIFANQAGLD MLETTLVALQ DVSLDKLFDD SGRKSLCAEF PKIMQQGFAC  780
LPAGICMSTM GRHVSFDQAI AWKVFAADET TVHCLAFTFV NWSFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11624GGRGGGGGG
21826RGGGGGGGK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689538.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A0K9QZ930.0A0A0K9QZ93_SPIOL; Uncharacterized protein
STRINGXP_010689538.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]