PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca55933.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 295aa    MW: 32085.5 Da    PI: 10.1256
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca55933.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31221278359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D y+WrKYGqK++kgs++pr+YYrC+s  gCp++k+ver+ +dp++++ tYeg+Hnh+
  Dca55933.1 221 DDYSWRKYGQKPIKGSPYPRGYYRCSSVrGCPARKHVERALDDPSMLVLTYEGDHNHP 278
                 99************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.7E-15174217IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-32207278IPR003657WRKY domain
SuperFamilySSF1182904.18E-27213278IPR003657WRKY domain
PROSITE profilePS5081130.951214280IPR003657WRKY domain
SMARTSM007741.5E-37219279IPR003657WRKY domain
PfamPF031061.3E-26221278IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAVELMHGSH AGTTSVMEEY AIREAAAAGI QSVEKLIKLL SRCQDVNLKP NTMSSSSWND  60
VEYKDVADVV VSKFRKVISL LDRTRTGQAR FRRGPKQVLL TGSHGSAFTR VQVQCPPPKT  120
INFSTSAGNS VTTSYMSSLT GDIESVQPSV SSSGFQITNM SSLGKPPLSG NSLKRKCSSK  180
DVSNCGASSG RCHCSKQRKS RMKRVVRVPA ISVKTADIPP DDYSWRKYGQ KPIKGSPYPR  240
GYYRCSSVRG CPARKHVERA LDDPSMLVLT YEGDHNHPSH VTDATVAAAL VLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-212172771271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021759456.11e-125probable WRKY transcription factor 7, partial
RefseqXP_021851375.11e-126probable WRKY transcription factor 7
SwissprotQ9STX06e-85WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0K9QJ791e-124A0A0K9QJ79_SPIOL; Uncharacterized protein
STRINGVIT_18s0001g10030.t011e-114(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-86WRKY DNA-binding protein 7