PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca55951.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HB-other
Protein Properties Length: 694aa    MW: 77369.6 Da    PI: 9.6807
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca55951.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-092068856
                -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                t+ ++++Le l+  +++p++++ ++ A+ lgLt +qV+ W+  rR ++k
  Dca55951.1 20 TPLEIQTLEILYSDDKNPTQSRVKDYASALGLTYEQVRRWYIERRRRDK 68
                7889******************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.7E-51374IPR001356Homeobox domain
SuperFamilySSF466895.56E-81568IPR009057Homeodomain-like
CDDcd000860.007361756No hitNo description
Gene3DG3DSA:1.10.10.602.9E-81876IPR009057Homeodomain-like
PfamPF000461.5E-62068IPR001356Homeobox domain
PROSITE profilePS5007110.9652070IPR001356Homeobox domain
PfamPF027911.8E-6377424IPR018501DDT domain
PfamPF156122.5E-7609646IPR028942WHIM1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MATQAHRINN HGGFNLHRKT PLEIQTLEIL YSDDKNPTQS RVKDYASALG LTYEQVRRWY  60
IERRRRDKPN TGQTGKGSTT QAKGKLKNKK RLSTVEVMEN RSTSTRPGIV QDTLYSPDYI  120
FKRVFRKDGP PLGSEFDSLP ALAFQGRSGI IGNRSSIAID QDEQRPPKRR KGQVKAPVKH  180
GKGKGLMAAW QVASNASIPE NARASERRKG ASCVNKTQAK RHGIGKGLMI VREQEDPDAT  240
NTRNRRPQRR KPVARRKSVN KVQEKKKKPY VQQKTVEPSC NINHKAHRDI CELAFEIGSN  300
EASLSSYPEL ADDEELELQE LPGGPNSLTC CLHSDTGGRH SCSLCKGLLP KFPPDFIQMR  360
KPFPMHPWGS TGKLEKKLFK VFHFLYTFAR PLDLCSFTLD EFAKAFIGKS ENQRSLVDFW  420
KASLNPLTWT EIFRQVMVAA GFGWRDGIQK KRCVHKGAEH MVKSVLRPGT LKGALFDVLF  480
VKRNQGIKVT ELAKSSQVAD LDLGKSDAEL EDSICSILAG DITLFEKISL STYRLRLSSV  540
MQNDEDGQSD AEGCGSIDDD YNKSNSVVSI NSSECDSGNP TLLLHTSLRF GDDNRVNTCT  600
EIDESYPGES WLLGLMEGEY SDLSIEEKLN ALLALVDLSS AGSSIRMKES ALFTENVPNI  660
YLHGSGGKIK RSTLRHRSSS SSSWADVRDT ADGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166ERRRRD
26267RRRRDK
3164169RPPKRR
4248267RRKPVARRKSVNKVQEKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021745181.10.0homeobox-DDT domain protein RLT3-like isoform X3
TrEMBLA0A0K9RYZ90.0A0A0K9RYZ9_SPIOL; Uncharacterized protein
STRINGXP_010694636.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.13e-82Homeodomain-like transcriptional regulator