PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca56086.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 302aa    MW: 33472.1 Da    PI: 6.5194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca56086.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.5e-092775254
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +r +  rE++RRd++N+ f++L  +l  +     +K++K +iL  +++ +k+L
  Dca56086.1 27 KRQKAGREKKRRDQLNDQFSQLGNVLDGD----RPKNDKTTILNDTIQLLKEL 75
                666888********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.8742575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-132695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-122697IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.88E-62679No hitNo description
PfamPF000103.9E-72775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-73181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRRVMESSEF QLAELSKTYE DPAAVRKRQK AGREKKRRDQ LNDQFSQLGN VLDGDRPKND  60
KTTILNDTIQ LLKELTAEVD KLKAEHTALS EESHELAQEK NDLREEKATL KSDVERLNVQ  120
CQQRLGSTFP WAAPDSLLPP QPAYPYPMPM PFPPPSPYPM HPYHYFRSPN PGIFQNPCPY  180
IPYMAPNPPA EQLSTQHTCP SARPSSRTEV SGGQVFRNSS GEDAVQQIDK NEDSVVVATD  240
LELKTSRSST DEDNKSPVEQ RSKKACQNKD VAAKTNSSSN CSSHSIQDSS SGSVAGGGKA  300
NG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13139GREKKRRDQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690444.12e-98PREDICTED: transcription factor bHLH121
SwissprotQ9LT233e-63BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0K9QB236e-83A0A0K9QB23_SPIOL; Uncharacterized protein
STRINGXP_010690442.18e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-59bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]