PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca56092.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 329aa MW: 37739.4 Da PI: 5.0356

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca56092.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.5	1e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelv +yL +k++g+k+el e+i+e+d+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v+s ++ Dca56092.1 6 LPPGFRFHPTDEELVAYYLDRKITGRKIEL-EIIPEIDLYKCEPWDLPdKsYLPGKDMEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRPVHS-QK 102 79**************************.99**********95335556888**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kktLv+ykgrap+g +t+Wvmheyrl Dca56092.1 103 RPVGMKKTLVYYKGRAPHGLRTNWVMHEYRL 133 9**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-66	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.367	6	156	IPR003441	NAC domain
Pfam	PF02365	7.7E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLDRKITG RKIELEIIPE IDLYKCEPWD LPDKSYLPGK 60 DMEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRPVHS QKRPVGMKKT LVYYKGRAPH 120 GLRTNWVMHE YRLLESPPGS TPSLKESYAL CRVFKKTIQI TPRIREDTRE SIDDTSREME 180 VNNEDNVENC YGQNGLSNKF PSETSSELTN QEITPTGSAL SNDHDLQTPI FTTDEANSSS 240 NFYPFGFECP SNFIQDMQMA SNYFNLPPLG IEDFPQINIS GTTIFKPIDH QDTIGCDKFK 300 EYMKGSVMFE DIFDLCSTQG NSIPLPLED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-57	1	156	15	168	NAC domain-containing protein 19
3swm_B	1e-57	1	156	15	168	NAC domain-containing protein 19
3swm_C	1e-57	1	156	15	168	NAC domain-containing protein 19
3swm_D	1e-57	1	156	15	168	NAC domain-containing protein 19
3swp_A	1e-57	1	156	15	168	NAC domain-containing protein 19
3swp_B	1e-57	1	156	15	168	NAC domain-containing protein 19
3swp_C	1e-57	1	156	15	168	NAC domain-containing protein 19
3swp_D	1e-57	1	156	15	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010690417.1	0.0	PREDICTED: NAC domain-containing protein 86
Swissprot	Q9FFI5	1e-84	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0K9QWY1	1e-179	A0A0K9QWY1_SPIOL; Uncharacterized protein
STRING	XP_010690417.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	5e-98	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]