PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca56094.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 23015.2 Da    PI: 9.2155
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca56094.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.82.2e-26959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                kri+n + rqvtfskRr g++KKA+ELS+LCdae+ +i+fsstgkl++yss
  Dca56094.1  9 KRIDNVTARQVTFSKRRRGLIKKAQELSTLCDAEIGLIVFSSTGKLFDYSS 59
                79***********************************************96 PP
2K-box36.12.8e-13951702398
       K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  L++e++   ++  hl G++Le ++l+eL +Le+q+e+s +k  + K e l++++ +l+ k  +l++en++L++++
  Dca56094.1  95 LLNNELKDKTQQVSHLNGDELEAMNLEELIRLERQVERSQSKLHKAKGEKLRKELATLKGKDAQLSRENQRLKEQM 170
                 55666666667889***********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.072161IPR002100Transcription factor, MADS-box
CDDcd002653.78E-37370No hitNo description
SuperFamilySSF554552.88E-28372IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.77286176IPR002487Transcription factor, K-box
PfamPF014868.9E-1095170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009739Biological Processresponse to gibberellin
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010220Biological Processpositive regulation of vernalization response
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVRQRIQIKR IDNVTARQVT FSKRRRGLIK KAQELSTLCD AEIGLIVFSS TGKLFDYSSS  60
RMTQVIQRHM LHADNFHNFD QSSLQFEAED TMCELLNNEL KDKTQQVSHL NGDELEAMNL  120
EELIRLERQV ERSQSKLHKA KGEKLRKELA TLKGKDAQLS RENQRLKEQM TQIDKDHAQN  180
APSQDNLPSD TFLRLGPPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-20169169MEF2C
5f28_B8e-20169169MEF2C
5f28_C8e-20169169MEF2C
5f28_D8e-20169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021775635.11e-95MADS-box protein AGL24-like
RefseqXP_021775643.11e-95MADS-box protein AGL24-like
RefseqXP_021775649.11e-95MADS-box protein AGL24-like
RefseqXP_021775653.11e-95MADS-box protein AGL24-like
RefseqXP_021775660.11e-95MADS-box protein AGL24-like
SwissprotQ9FUY61e-52JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2H5Q2I43e-66A0A2H5Q2I4_CITUN; Uncharacterized protein
STRINGXP_010690400.14e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.13e-54AGAMOUS-like 24
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]