PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca56149.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 215aa    MW: 24995.2 Da    PI: 9.82
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca56149.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.83e-193178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
       Dca56149.1 31 RGPWTVEEDLALINYITTHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 78
                     89********************************************97 PP
2Myb_DNA-binding49.69.4e-1684127146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
       Dca56149.1  84 RGKITLEEQLMILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 127
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.8272682IPR017930Myb domain
SuperFamilySSF466891.26E-3128125IPR009057Homeodomain-like
SMARTSM007171.5E-153080IPR001005SANT/Myb domain
PfamPF002491.8E-163178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-233285IPR009057Homeodomain-like
CDDcd001676.94E-113378No hitNo description
PROSITE profilePS5129418.13783133IPR017930Myb domain
SMARTSM007177.4E-1483131IPR001005SANT/Myb domain
PfamPF002491.1E-1484127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-2386132IPR009057Homeodomain-like
CDDcd001671.41E-988127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MNINNIRSSS SSSEKKSEIT QNSDDEMDLR RGPWTVEEDL ALINYITTHG EGRWNSLARC  60
AGLKRTGKSC RLRWLNYLRP DVRRGKITLE EQLMILELHS RWGNRWSKIA QYLPGRTDNE  120
IKNYWRTRVQ KHAKQLKCDV NSKQFKDTMR YLWMPRLIER IQAASSTTVT TTTPTASTTT  180
VECSELNQSI NLATSNNNAF HAHEPNVGWM LEPFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-262812524120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027944.11e-100PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY37e-89MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A426Y7Z68e-97A0A426Y7Z6_ENSVE; Uncharacterized protein (Fragment)
STRINGXP_006488792.18e-97(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-86myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]