PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca56170.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

CO-like

Protein Properties

Length: 443aa MW: 49440.4 Da PI: 4.8097

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca56170.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.7	2.1e-07	20	63	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC++C + H+ H++v Dca56170.1 20 ARACDCCVRKRARWYCAADDAFLCQSCDGSVHSAnplarrHERV 63 578*****************************657888888876 PP
2	CCT	22.2	5.2e-09	423	443	1	21
CCT 1 ReaallRYkeKrktRkFeKki 21 Rea+++RY+eKr+tR+F+Kki Dca56170.1 423 REARVSRYREKRRTRLFSKKI 443 9*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	4.0E-8	18	65	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.537	18	65	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.7E-6	20	63	IPR000315	B-box-type zinc finger
CDD	cd00021	3.61E-8	21	65	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MTSNSSHSNN MAMAMSGKTA RACDCCVRKR ARWYCAADDA FLCQSCDGSV HSANPLARRH 60 ERVRLKSASL KHSSDDNLPT WHRGLTRKPR TPRQGKNSSK PFTTNPRNPA STGLQNPTHI 120 VPDLGMEEAT SFSSSHGEDE EQLLFRVPEY DPFMTEFCTS RANTPIIDVK NDHQFMIKLP 180 SDLELEEFAA DVETLLGKGL DDESFGIEEL GLLDHHSPNN FNNINNNSSI NIDDNDDDDD 240 EKEHGVVELS KVVKEENVVA GGGELIKKCE IEIETDDIGF RVPFDLSFDY DFPTSCEDLD 300 SHGQAVAVDG SSRVQEASKD ELDMCKIEGI NDKYNDEDSN QESNNKVLMN DNNTRKILLR 360 LDYEAITEAW ASHGSPWMNG QRPDIGLDDS WPHCLGGSGT GAHHTLYGDT QVIGNRVAGD 420 GGREARVSRY REKRRTRLFS KKI

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MTSNSSHSNN MAMAMSGKTA RACDCCVRKR ARWYCAADDA FLCQSCDGSV HSANPLARRH  60
ERVRLKSASL KHSSDDNLPT WHRGLTRKPR TPRQGKNSSK PFTTNPRNPA STGLQNPTHI  120
VPDLGMEEAT SFSSSHGEDE EQLLFRVPEY DPFMTEFCTS RANTPIIDVK NDHQFMIKLP  180
SDLELEEFAA DVETLLGKGL DDESFGIEEL GLLDHHSPNN FNNINNNSSI NIDDNDDDDD  240
EKEHGVVELS KVVKEENVVA GGGELIKKCE IEIETDDIGF RVPFDLSFDY DFPTSCEDLD  300
SHGQAVAVDG SSRVQEASKD ELDMCKIEGI NDKYNDEDSN QESNNKVLMN DNNTRKILLR  360
LDYEAITEAW ASHGSPWMNG QRPDIGLDDS WPHCLGGSGT GAHHTLYGDT QVIGNRVAGD  420
GGREARVSRY REKRRTRLFS KKI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021723814.1	1e-131	zinc finger protein CONSTANS-LIKE 16-like
TrEMBL	A0A0J8DWJ0	1e-125	A0A0J8DWJ0_BETVU; Uncharacterized protein
STRING	XP_010667660.1	1e-126	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	5e-71	B-box type zinc finger protein with CCT domain