PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca56299.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 410aa    MW: 45685.5 Da    PI: 4.9687
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca56299.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.23e-165094147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT++E+ ++++a k++G   W++I +++g ++t+ q++s+ qk+
       Dca56299.1 50 RERWTEDEHTKFLEALKLHGRA-WRKIEEHIG-TKTAVQIRSHAQKF 94
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.73E-164498IPR009057Homeodomain-like
PROSITE profilePS5129420.7284599IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-94797IPR009057Homeodomain-like
TIGRFAMsTIGR015579.7E-164897IPR006447Myb domain, plants
SMARTSM007171.2E-124997IPR001005SANT/Myb domain
PfamPF002491.3E-135093IPR001005SANT/Myb domain
CDDcd001676.19E-105295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MVSQEKTSAD NSNSVLSSEN VVSMDVCVQS DIDEGQIPKI RKPYTITKQR ERWTEDEHTK  60
FLEALKLHGR AWRKIEEHIG TKTAVQIRSH AQKFFSKVVR ETINSNASTT GPIEIPPPRP  120
KRKPSHPYPR KLALPTKKDN SPDQQGRSIS PYSSVDDQQN QSPTSVLSAL ASDTLASDSD  180
TPNDSPSPDC FNDKTDVLPS DDNSPQDDVR ETPLTPDERV SVKLELFPSM DSFDKPQATA  240
TKVLKLFGKD VVVSSTSSCL NKSPSMDMGE SVLNETAENS QDCQTLYCVD SSGNHVEKPV  300
PLPWWVFFKG MPVSPLETQV ENPQEKETER EGSFAGSNSG SVNAEGNTDN NYDTESQSNY  360
EIKSLLEKRS SINKPNKGFV PYKRCFSERD MQSSTASINE DESRRIRLCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856034.11e-143protein REVEILLE 1 isoform X1
TrEMBLA0A0K9R4831e-142A0A0K9R483_SPIOL; Uncharacterized protein
STRINGXP_010675239.11e-138(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-43MYB_related family protein