PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca56430.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 492aa MW: 54202.2 Da PI: 6.7092

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca56430.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.5e-09	308	355	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq Dca56430.1 308 SHSLAERVRREKISERMKLLQDLVPGC----NRVTGKALMLDEIINYVQSLQ 355 8***********************9....788***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-16	302	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.98E-10	302	359	No hit	No description
PROSITE profile	PS50888	15.65	304	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-17	304	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-6	308	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-10	310	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MDNEFFMNGG IPPQLQMQYN QQPFSTTWQS LGPSIEIQTT QPPPPNDHFE SALSSMVSSP 60 VASSSGVSTD NFLVRELIGK LGNICNTNDF QGYLHESAYN STNNSCYSTP LSSPPPKLVC 120 SSLPIVDSFG LPAMPGDPGF AERAARFSSF GSRSFNSRNN GADVVAVAAA AAARSCSKLQ 180 RVCSSPSLKV DPGSRVVKNV NENENDNDND GDNDNEKNQM CKSRENSTIS AQNQAVENGS 240 NNRKRKGAVS KGKAPISTTG ENSENSNKKR SKSEETEENK EGKEKQKVNE APKDYIHVRA 300 RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNRVTGK ALMLDEIINY VQSLQRQVEF 360 LSMKLSTVNP RLELNMDNLL TKDRIQPNCS NLTHPMYQTM VPTLYGQPHQ NPLQESLTTL 420 GSPLDPLNPT LNHSPPFQLS SFDAFPNTLS QPPSSCEGDL HNIVQMRFSQ NDNGFQAPTF 480 YGTNPAQMKI EY

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MDNEFFMNGG IPPQLQMQYN QQPFSTTWQS LGPSIEIQTT QPPPPNDHFE SALSSMVSSP  60
VASSSGVSTD NFLVRELIGK LGNICNTNDF QGYLHESAYN STNNSCYSTP LSSPPPKLVC  120
SSLPIVDSFG LPAMPGDPGF AERAARFSSF GSRSFNSRNN GADVVAVAAA AAARSCSKLQ  180
RVCSSPSLKV DPGSRVVKNV NENENDNDND GDNDNEKNQM CKSRENSTIS AQNQAVENGS  240
NNRKRKGAVS KGKAPISTTG ENSENSNKKR SKSEETEENK EGKEKQKVNE APKDYIHVRA  300
RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNRVTGK ALMLDEIINY VQSLQRQVEF  360
LSMKLSTVNP RLELNMDNLL TKDRIQPNCS NLTHPMYQTM VPTLYGQPHQ NPLQESLTTL  420
GSPLDPLNPT LNHSPPFQLS SFDAFPNTLS QPPSSCEGDL HNIVQMRFSQ NDNGFQAPTF  480
YGTNPAQMKI EY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685111.1	1e-172	PREDICTED: transcription factor bHLH78
TrEMBL	A0A0J8C085	1e-171	A0A0J8C085_BETVU; Uncharacterized protein
STRING	XP_010685111.1	1e-172	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-61	bHLH family protein