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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Dca56676.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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| Family | B3 | ||||||||
| Protein Properties | Length: 2506aa MW: 284123 Da PI: 6.7421 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 60.8 | 2.4e-19 | 1862 | 1947 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
+l+s+rl +p kf+++ gg + + l+l+ +sg+sW+v l + +g+ ++ +GW Fvk++ ++ gD++vF++dg+s f +v++f++
Dca56676.1 1862 LPNLSSQRLEVPSKFIKHLGGRTSG--SLSLTGPSGNSWNVDL--IGDDGQLYFDGGWPTFVKDHSIQCGDSLVFRYDGNSHF--TVQIFDE 1947
5688999*********777988655..6***************..9*********************************9999..****986 PP
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| 2 | B3 | 42.1 | 1.6e-13 | 2087 | 2178 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
v+ s+ +g +++p kf + +++++++tl++++g W v++ rk+ ++++ +GW F++ ng+k D+++F+l+g e el+v+++r
Dca56676.1 2087 VMNYSNIKGNGTMRIPSKFSVHL---PNCKTKVTLKNLNGDCWLVNCLPtaRKTCTMHTFCGGWLTFARVNGIKIEDVCIFELVG--ELELLVRILR 2178
555566677899*******8444...458889***************4466999999*************************998..7778999987 PP
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| 3 | B3 | 50.2 | 4.6e-16 | 2316 | 2399 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f kv ++s+v+ s+ + +p+kf ++h + ++s ++l++ +g sW+v +++++ + +GW +F+++n+Lk+g ++vF+l++++
Dca56676.1 2316 FTKVIVNSNVSGSHTVDIPRKFSAAHlP-S-HKS-NIVLRNMEGCSWNVVS--ACYGNQTKFCGGWMSFARSNELKVGNVCVFELVDEK 2399
89*********************99942.3.333.7***************..77777778999********************98754 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.50.140 | 1.7E-14 | 6 | 112 | IPR012340 | Nucleic acid-binding, OB-fold |
| Pfam | PF16900 | 4.7E-7 | 7 | 87 | IPR031657 | Replication protein A, OB domain |
| SuperFamily | SSF50249 | 3.73E-14 | 8 | 111 | IPR012340 | Nucleic acid-binding, OB-fold |
| CDD | cd04481 | 5.91E-19 | 10 | 112 | No hit | No description |
| CDD | cd04476 | 9.90E-23 | 142 | 279 | No hit | No description |
| SuperFamily | SSF50249 | 1.58E-22 | 143 | 287 | IPR012340 | Nucleic acid-binding, OB-fold |
| Pfam | PF08646 | 7.2E-13 | 156 | 274 | IPR013955 | Replication factor A, C-terminal |
| Gene3D | G3DSA:2.40.50.140 | 8.8E-11 | 170 | 274 | IPR012340 | Nucleic acid-binding, OB-fold |
| Pfam | PF14214 | 5.2E-63 | 741 | 923 | IPR025476 | Helitron helicase-like domain |
| SuperFamily | SSF52540 | 1.82E-24 | 1312 | 1571 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF05970 | 4.0E-153 | 1380 | 1745 | IPR010285 | DNA helicase Pif1-like |
| Gene3D | G3DSA:3.40.50.300 | 9.9E-4 | 1390 | 1507 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 2.18E-43 | 1518 | 1588 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 1.8E-26 | 1520 | 1590 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 1.8E-26 | 1628 | 1671 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 2.18E-43 | 1644 | 1676 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 2.18E-43 | 1710 | 1849 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 1.8E-26 | 1781 | 1833 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF101936 | 1.96E-24 | 1850 | 1950 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.3E-24 | 1851 | 1949 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 14.635 | 1855 | 1948 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.91E-20 | 1855 | 1946 | No hit | No description |
| SMART | SM01019 | 4.1E-18 | 1857 | 1948 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 6.2E-17 | 1862 | 1947 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.5E-17 | 2077 | 2178 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 8.63E-19 | 2079 | 2180 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.64E-16 | 2082 | 2178 | No hit | No description |
| SMART | SM01019 | 4.1E-11 | 2084 | 2180 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 5.4E-12 | 2084 | 2178 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.335 | 2084 | 2180 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 1.37E-21 | 2310 | 2403 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 5.0E-21 | 2310 | 2404 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 2.42E-19 | 2314 | 2399 | No hit | No description |
| PROSITE profile | PS50863 | 13.14 | 2316 | 2417 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 5.4E-11 | 2316 | 2413 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.8E-13 | 2316 | 2398 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000723 | Biological Process | telomere maintenance | ||||
| GO:0006281 | Biological Process | DNA repair | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003678 | Molecular Function | DNA helicase activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 2506 aa Download sequence Send to blast |
MSHINVQYTD IIGLLTGVSP IEIVGADNEK KDKMKIELED TSNNRINVIL WNNFAENMST 60 YISENKGPTI VALQFAKFNV FKGGFSISNS FYASRLLMNP EIPETNEILT SLVESEESHV 120 LTQISSGNPI SLEDEFMKQS MHKTLDEIPD INQECYVAVL ATTVYIETEH GWFYNTCNTC 180 TGKVVSEGSG LFSCEICNVT VKFVVPRYKI TLRVEDDTGV ASFAMFDRDV YNLINKKASV 240 LRDNQIKDDD CDVFPPEFDV LLDRQFLFRI HITNFNLKNK WPIYSISRIT EDPGLISAHL 300 ATVKSTQNRG DKSDQNQISG DQASVEISSD DNKHTLNAFT FTFNAFSRKE YYTMSRSLRS 360 GKYVIQSNRI ISSVQRNILH RTTAVEQDDE TLTTIVANVQ VPPSISEPVE LSSNTEVDAI 420 PFNATYFRED IPSDNDDIES TNSDAESEND DGYHYEGFWD IKDPTWECEY CGAMMWYEER 480 ARKDRSSKHP KFTLCCKQGK VQLPLLTNPP QVLSTLLANK DAKSRHFIEN IRSYNTNFSF 540 TSLGGKIDTS VNQGRGPYSF RMHGQNYHRI GSLLPQNGSE PKFAQLYIYD TEHEVEHRMR 600 FSNSSKSLND AILKELKDML DQHNCLTQAF RMARDRIGEG DEANVRIRLI GRRNTDGRTY 660 NLPSASEVAA LIVGDIGSFD VRDIVVESTN GRLQRINELH PSYLALQYPL LFPYGEDGYR 720 VNIPFSGNTT GKRSRISIRE FLAYRIQKRK NEAHTILLAR KLLQQFLVDS YTMIESQRLS 780 YFRSNQKKFR TDLKKNIADV LSRGDTDPSS VGKRIILPSS FPQGDRFMVQ NYHDGMANCK 840 WFGFPDLFIT FTCNQKWPEI CRHVKEMGLK PEDRPDIISR VFRIKLKQLI KDIKRDNIFG 900 RVQGVVYTIE FQKRGLPHAH IVVWMHRADK FPTAEDIDKI ICAEIPDKEQ DPHTYEVVTD 960 LMMHGPCGAA NKSSPCMMNG KCSKHFPKRY QDHTTIDVDG YPVYRRRDDG KVVEKNGTFL 1020 DNRYVVPYNP KLLLKYRAHI NVEWCNQSRS IKYLFKYINK GHDRVTAALS KQRAENENND 1080 IDEIKMYYDC RYISASEAAW RIFGFEIHYQ NPPVERLRFH LPNEQSVVFE DDDTVDSVLY 1140 RSSIDKTMFT AWMDCNKIYP AARELTYVEF PTKFVWKKKS NEWTPRKNGF TIGRIYHVPP 1200 SCGEKYYLRV LLNHVKGPTS FEDIRTINGI LYPSYKDACY ALGLLDDDKE YIDALTEASF 1260 WGSAQYLRNL FAMLLMSGSV SRPEFVWEKT WKFLADDVLY RQRRFLQIPD LELSDEQLQN 1320 HTLAEIEKIL QNNGSTLRKY PNMPLPDAAL ILESHNKLIQ NELLYDRVSL RQEHERLLSC 1380 LTDEQRKVYT EIMDAVSRGQ GGVFFIYGYG GTGKTFIWRT LCAAIRSVGE IVLPVASSGI 1440 ASLLLPGGRT AHSRFRIPLN INEHSTCEIR PGTDLAALLR KTKLIIWDEA PMVNRFCFEA 1500 LDKSLRDILR LPNGEVSDQP FGGKTVVFGG DFRQILPVIL KGSRQDIVHS AINSSYLWQY 1560 CKVLKLTRNM RLQSGSSDTN LEELREFSKW ILNVGDGVLG EPNDGEATIE IPDDILIKEA 1620 SNPIAAIVDS TYPSILDNLW DAKYFQERAI LAPTHEIVEM VNEYLLSLIP GEEKVYLSAD 1680 SICSSDKVTG FDEGAYSIEF LNSIRCSGIP NHEIKLKVGV PVMLLRNLDQ FAGLCNGTRL 1740 VITKLGDHVL EAKVISGSNI GDKVFIPRML LSPSDTSRLP VKLRRKQFPI TVCFAMTINK 1800 SQGQSLTHVG LYLPRPVFSH GQFYVAVSRV TSKKGLKVLI CDKDGCIGMM NGKKPHFLEI 1860 FLPNLSSQRL EVPSKFIKHL GGRTSGSLSL TGPSGNSWNV DLIGDDGQLY FDGGWPTFVK 1920 DHSIQCGDSL VFRYDGNSHF TVQIFDESSC EKDEALSAKC SQKSIDLGGD SGKKRGRGTK 1980 ASSIHLKSQK KFKGTLIPVL PSGYRKKDLE ISTIENEYAS STTRDSDESR VPLVIALPSI 2040 SSVEWKASKK KAERKMPDSS INSSLLEFIE SRVAEYITSN SPYFVRVMNY SNIKGNGTMR 2100 IPSKFSVHLP NCKTKVTLKN LNGDCWLVNC LPTARKTCTM HTFCGGWLTF ARVNGIKIED 2160 VCIFELVGEL ELLVRILRLG VEGLENQTLN SSFGACDTEI SGWPLESNAN VTEDTSGDQF 2220 LEDLEQLDDL FLNDFEDHEE NIENVPSIEQ KATKFFEFND DSDKYLLSNA EGPTLLESET 2280 SGYNEINSEA RDTVNKQAMV EESTTHLTYT SPFPSFTKVI VNSNVSGSHT VDIPRKFSAA 2340 HLPSHKSNIV LRNMEGCSWN VVSACYGNQT KFCGGWMSFA RSNELKVGNV CVFELVDEKV 2400 LQVDERLCIC LSMYGSKQNK RKLTVAFVLL ISRQVVILAI DVDRLCIGCR LLALLDLQSL 2460 QVSRYNGISC ELSVYVIVSL LTLQSLYAGR QSVRQSVMYS TSSVVY |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 1781 | 1786 | KLRRKQ |
| 2 | 1971 | 1977 | GKKRGRG |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010668250.1 | 0.0 | PREDICTED: uncharacterized protein LOC104885245, partial | ||||
| TrEMBL | J3SIC4 | 0.0 | J3SIC4_BETVU; ATP-dependent DNA helicase | ||||
| STRING | XP_010668250.1 | 0.0 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G18990.1 | 3e-16 | B3 family protein | ||||
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