PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5670.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 557aa    MW: 61299.8 Da    PI: 8.545
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5670.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07450499147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
        Dca5670.1 450 RRPFSVSEVEALVHAVEKLGTGRWRDVKIRAFenvKHRTYVDLKDKWKTL 499
                      678999********************99998899*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416445504IPR017930Myb domain
SMARTSM007174.9E-7449502IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-10450500IPR009057Homeodomain-like
CDDcd116604.55E-17451501No hitNo description
SuperFamilySSF466891.4E-15451531IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MDGDNRGNGS LVVEHCDRGS TEVASPPLTL ELGIRGLGVD LNEKDFQTPS HDASLAPTKI  60
DLNRDGTDSH SVEDPEILDG ISPTLVCSDG SVKLTLGNDP YPCKGDNVAV VSRDDDENSS  120
ECIQPSTIKA ARSPPTRVGD RRIRKLLESK HRRIFSKSRD GDLTDADVRC LYRNRRIGYK  180
RQRSQRIYPF KRRRFYHHNS LSSSHADMSY KSLYSYPDKA FDSKSSGFSS LGVNGSSACV  240
AGQSTTFSSR ESHVKLRIKS FRVPELFIEM PETASIGSLK RTVMEAVTAL LGGGLRVGVF  300
LQGKKVRDDN RTLVQSGICH NNKAESLGFS LEPNPSPAVT TPVYSEENSL VLPTDVLPQP  360
VPQSPIITSI QQGLSTSLLS ADHPAANNLS NLVESDYDSA PSPVSDVSGE KAAVDSHALV  420
SLPSGTPQAL AVVHSNQKSK RHDMGQRRIR RPFSVSEVEA LVHAVEKLGT GRWRDVKIRA  480
FENVKHRTYV DLKDKWKTLV HTASIAPQQR RGEPVPQELL DRVLAAHAYW TEQQSKQQQL  540
PKQPPPSETH LVLCEHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-564365413108Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145DRRIRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716126.10.0telomere repeat-binding protein 2-like
TrEMBLA0A0K9S2D70.0A0A0K9S2D7_SPIOL; Uncharacterized protein
STRINGXP_010685737.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-104TRF-like 2