PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca56792.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 287aa    MW: 32057.4 Da    PI: 6.0917
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca56792.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-131462146
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT..TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg..kgRtlkqcksrwqk 46
                     +g+W++eEd +l+ ++++ G+g +W + ++++    gRt++++k++w++
       Dca56792.1 14 KGPWSPEEDAKLKSYIEKNGTGgNWIALPQKIAqlPGRTDNDIKNYWNT 62
                     79*********************78777777777778**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-20571IPR009057Homeodomain-like
SuperFamilySSF466894.86E-13870IPR009057Homeodomain-like
PROSITE profilePS5129418.826968IPR017930Myb domain
SMARTSM007172.8E-111366IPR001005SANT/Myb domain
PfamPF002492.4E-121462IPR001005SANT/Myb domain
CDDcd001673.70E-111664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KNGTGGNWIA LPQKIAQLPG RTDNDIKNYW  60
NTRLKKKLMA KQRKEHAANR AVLLDQEIKR ETTHHNHEMY LLNQTLNQHQ NQLPYWADPA  120
QLSNPMVHPH NNLDDPLTRL LMKIGGQFYD DPQNMTGNDQ QSLSFPKHEQ VYMDGSQAAQ  180
WTGTVGYEVN DDGNMNSIFS ESSMSFPTEV EAYFSNLLRF ENVGSDQSCY SSVDLGNNNG  240
SNTTTTTTTT TTNSAGSGGS WGDVKNSLVN TPVSEFEAYQ NGVLKAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021717997.11e-83transcription factor RAX3-like
TrEMBLA0A0K9RLN95e-64A0A0K9RLN9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010679693.15e-82(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-38myb domain protein 84