PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca56868.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 301aa    MW: 33954.5 Da    PI: 6.7913
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca56868.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.5e-13203293199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+k ++ps+++   +l lp +f+++ + +  ++ ++tl de+g+++   +    ++++  l++GW++F  +++L +gD ++ +l++ s    +v ++r+
  Dca56868.1 203 FVKPMLPSHTTGGFWLGLPTDFCRARMPN--KDSDITLVDEDGEEFPTVY--LAHKKG--LSGGWRGFSLSHELVDGDAIICQLIKPSVL--KVYIIRA 293
                 89*********************999755..4558***************..555555..9**********************9985555..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105518.8E-238103IPR018289MULE transposase domain
PROSITE patternPS0100707599IPR001207Transposase, mutator type
SuperFamilySSF1019361.59E-21198295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-17199294IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-20201292No hitNo description
SMARTSM010193.7E-19203294IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898203294IPR003340B3 DNA binding domain
PfamPF023628.6E-11203293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006313Biological Processtransposition, DNA-mediated
GO:0003677Molecular FunctionDNA binding
GO:0004803Molecular Functiontransposase activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRGCRSLIGV DGAHLKGNYG GVLLSAVGLD GNNEIYPLAV AIVDSENKDS WTYFFRQVKQ  60
ILEQGGRDDW TIISDRQKGV EPALEAVWPE ANRRFCCRHL SKNFKQDYPG LLMHGLFWKV  120
VNATSEFSFK KALESVAEHG SFGAARWFLD LGDKEAWAKH RSYGVRRRDL SDRVYATEEE  180
RTYAINEAEK LEKKLKEEGF PTFVKPMLPS HTTGGFWLGL PTDFCRARMP NKDSDITLVD  240
EDGEEFPTVY LAHKKGLSGG WRGFSLSHEL VDGDAIICQL IKPSVLKVYI IRASGFHSSE  300
D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021737711.14e-74uncharacterized protein LOC110704231
STRINGXP_010678146.12e-64(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-42B3 family protein