PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca56869.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 226aa MW: 25474.1 Da PI: 8.898

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca56869.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.2	1.5e-13	130	217	4	99
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ps+++ +l lp +f++e + ++ + +tl de+g+++ + rkk+ l++GWk+F+ ++L +gD v+F+l++ s +v ++r+ Dca56869.1 130 PMLPSHTSGGFWLGLPTDFCRESM--PRDDGVVTLVDEEGEEFPTVYLARKKG----LSGGWKGFAVFHELVDGDAVIFQLIKPSVL--KVYIIRA 217 688999999*********9996..334558***********667776....9*********************985555..8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.14E-21	123	219	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.4E-17	124	218	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.45E-22	125	216	No hit	No description
SMART	SM01019	5.6E-17	127	218	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.392	127	218	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.5E-12	131	217	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGLSYEENRQ KRVEENKKRL EELNLLHLSQ SLHHLSPKSS PMKKVGKART VEKKMVAVRR 60 SARVASNPAP VYAEVALPRI YSPRKSYGVA RRDLSDRVYA TEDERAFSIN EAEKLEEKLK 120 EEGFPTLIRP MLPSHTSGGF WLGLPTDFCR ESMPRDDGVV TLVDEEGEEF PTVYLARKKG 180 LSGGWKGFAV FHELVDGDAV IFQLIKPSVL KVYIIRANGL ESGEDS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667517.1	1e-123	PREDICTED: B3 domain-containing protein At5g42700
Swissprot	Q69V36	2e-68	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A0J8B623	1e-121	A0A0J8B623_BETVU; Uncharacterized protein
STRING	XP_010667517.1	1e-122	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-49	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]