PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5706.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 252aa    MW: 29382.8 Da    PI: 6.7917
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5706.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-14855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l + v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
        Dca5706.1  8 KGPWTEQEDIQLDCFVGLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding56.18.7e-1861106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E++l+++++ q+G++ W++Iar+++ gRt++++k++w++++
        Dca5706.1  61 RGKMTPNEEKLILELHSQWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 106
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.396355IPR017930Myb domain
SuperFamilySSF466894.12E-286102IPR009057Homeodomain-like
SMARTSM007171.4E-13757IPR001005SANT/Myb domain
PfamPF002491.2E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-19962IPR009057Homeodomain-like
CDDcd001671.27E-91055No hitNo description
PROSITE profilePS5129425.79856110IPR017930Myb domain
SMARTSM007179.1E-1660108IPR001005SANT/Myb domain
PfamPF002496.6E-1661105IPR001005SANT/Myb domain
CDDcd001676.44E-1163106No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2463109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVQDEVRKGP WTEQEDIQLD CFVGLFGDRR WDFIAKVSGL KRTGKSCRLR WVNYLHPGLK  60
RGKMTPNEEK LILELHSQWG NRWSRIARRL PGRTDNEIKN YWRTHMRKQA QEKKRGISTS  120
SSSLANSSFS SDSAAVNSMT TTETSSMSHS TEAPDRSALR EKKHKKDENK KEEEFYSMDD  180
IWKDITSDEE QIKPFYDGYS EESFLSCPPM VSPLWEYCPD TFWRLEEDGS KILFSANDTF  240
VPSHQNEYAS NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2651101105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865245.11e-126transcription factor MYB59 isoform X1
SwissprotQ9LX821e-84MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A438G1I01e-108A0A438G1I0_VITVI; Transcription factor MYB59
TrEMBLF6GV451e-108F6GV45_VITVI; Uncharacterized protein
STRINGXP_010685834.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.18e-79myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]