PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca57086.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 362aa MW: 42557.4 Da PI: 8.3617

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca57086.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.7	3.2e-12	2	63	28	90
FAR1 28 itkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++++++vCs+eg+r+e++ ek++r+ +etr C+ak+ vk+++++ +ev l HnH+l+ Dca57086.1 2 VKEKHYVCSNEGTRSESSLG-EKKKRKVPETRKCCNAKIIVKLTDEQLYEVVVHTLIHNHSLT 63 5789***********999.99************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-9	3	63	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-32	185	279	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MVKEKHYVCS NEGTRSESSL GEKKKRKVPE TRKCCNAKII VKLTDEQLYE VVVHTLIHNH 60 SLTRMRWQHL HRSGRKMSNY KADAIIEMYN NGMSTIDQFN LLCNQYGGQQ SVGHTRKDHY 120 NFVTKLKMND ISKGDAHSLI EKLYKQQSVE PLFSIKFQMD EDNRLTSIFW RDSMMREDFE 180 IYGDVMMYDT THRTNEYNLV CSPFVGVNNH WSNVMFGCTF LSNEKVESFV WVFEVFKESM 240 GGKCPTTIIT DQDTAISSAI SKVFPNTRHR LCLWHIQKNV VSYFGHLKQN NKFKSEFRHC 300 LMGCCDVDEF EKCWDAMIER YGLRGNSWFS RLYNFREKWC TTYNKDFFSA DDEGKVASPQ 360 SK

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MVKEKHYVCS NEGTRSESSL GEKKKRKVPE TRKCCNAKII VKLTDEQLYE VVVHTLIHNH  60
SLTRMRWQHL HRSGRKMSNY KADAIIEMYN NGMSTIDQFN LLCNQYGGQQ SVGHTRKDHY  120
NFVTKLKMND ISKGDAHSLI EKLYKQQSVE PLFSIKFQMD EDNRLTSIFW RDSMMREDFE  180
IYGDVMMYDT THRTNEYNLV CSPFVGVNNH WSNVMFGCTF LSNEKVESFV WVFEVFKESM  240
GGKCPTTIIT DQDTAISSAI SKVFPNTRHR LCLWHIQKNV VSYFGHLKQN NKFKSEFRHC  300
LMGCCDVDEF EKCWDAMIER YGLRGNSWFS RLYNFREKWC TTYNKDFFSA DDEGKVASPQ  360
SK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	27	KKKRKV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021740411.1	1e-132	protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010665808.1	1e-130	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-65	FAR1-related sequence 5