PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57120.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HB-other
Protein Properties Length: 382aa    MW: 43108 Da    PI: 4.4187
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57120.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-09313360653
                 S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                 +++k q+e+Le+++++++ p+ +++  + + ++L+ r+V  WF  +R+
  Dca57120.1 313 RLKKVQVETLENVYRRTKRPTNAMISSIVHVTNLPRRRVVKWFEDQRT 360
                 57899**************************************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.054305359IPR001356Homeobox domain
CDDcd000861.96E-7308359No hitNo description
SuperFamilySSF466891.63E-9308364IPR009057Homeodomain-like
SMARTSM003894.4E-6311369IPR001356Homeobox domain
PfamPF000465.8E-7313360IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-9313362IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MADTKPTTTP AATETHLIRE DDKPVHRLSD YRTIVGSLQY LSLTRPDIAF TVNRLAQFLH  60
HPTEAHWSAL KRKISMSLCL QSRKTGGSKK GADVDEDAFE ALFKQLEEDL KKDGEFVDDG  120
EDDISEEDLA LLERELGEAL AFDEDLSELL NLDTDDAVGV EAGSDVVVED VVDDNDEEDD  180
SVNDEEEETE DEDEEAAEPI KLRGWQLRRL AQALKVGRRK TSIKKLAAEL CIDRAIVLEL  240
LREPPPNLLM MCAALPDKQE PAITNNNSET VPSVASEEIV ESEETESKPD EKPETKTDKP  300
IHVLQGSWSA QKRLKKVQVE TLENVYRRTK RPTNAMISSI VHVTNLPRRR VVKWFEDQRT  360
ADGVPEEHRP YRRSASESVF AK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021737964.11e-112protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
TrEMBLA0A438KET71e-102A0A438KET7_VITVI; Protein overexpressor of cationic peroxidase 3
TrEMBLF6H3091e-101F6H309_VITVI; Uncharacterized protein
STRINGXP_010670653.11e-108(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.12e-52overexpressor of cationic peroxidase 3