PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57170.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 429aa    MW: 47092.3 Da    PI: 5.2083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57170.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12265308755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   Er+RR+ri +++ +Lr+++Pk      +Kl  a++L  Av+YI +Lq
  Dca57170.1 265 LTERNRRKRISDGILTLRSIVPKI-----TKLQNAATLSDAVDYIVELQ 308
                 57*********************7.....7***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-1611185IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.5E-14250319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.28E-11256312No hitNo description
PROSITE profilePS5088813.484258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-12260321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-11264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9264308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MGHLESALEW LRPLVLGSNS WDYCVVWKIC DDPSRESLVA VIIVVVVVAA AVIVVGCGGG  60
GYTPFIEYVG CCCNGVKNQK SGKKRKSVSI SACKDASSVH PAITKSCEAL AQLPPYMSLD  120
TSVHGEVVVL SQPRWIHISR TADDSKLSNE EFKGTRVLIP VLGGLVELFS TEYVSEDESI  180
IQYVQCQCNG SETETLSNST ITSDGPFYPL LEKTLDTLLS SITQFNISPD STPGSVSQAT  240
PFTVKEESEG SQKVTKKHCK SKNLLTERNR RKRISDGILT LRSIVPKITK LQNAATLSDA  300
VDYIVELQNE QRKLLDELEN SDEYSSDFEP TSFKTSNQEH STFSPTKSSL SQAQVEVNQI  360
GAGNYLLRVE SQQSRGVITR LLEAVGSLDV AVVDVNATVC NGRMSSNIIV QTKNEEVQEK  420
DLREHLMRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842759.11e-121transcription factor bHLH90
TrEMBLA0A0K9RVS11e-119A0A0K9RVS1_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.15e-53bHLH family protein