PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57201.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HSF
Protein Properties Length: 488aa    MW: 54488.4 Da    PI: 4.4892
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57201.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.71.5e-36351272103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+++++++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g+k+ll+ki 
    Dca57201.1  35 FLCKTYDMVDDPATDSIVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEGFLRGQKDLLKKIT 122
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    Dca57201.1 123 RRKKT 127
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3928119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-3630124IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6331124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-193558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3235124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDTTTTTTST TAGTADAAVN SQPTPMPVAN APPPFLCKTY DMVDDPATDS IVSWSSTNNS  60
FVVWNPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFKKVDP DRWEFANEGF LRGQKDLLKK  120
ITRRKKTDGH VQQSQQPTHA QNPVGACVEV GKFGLEEEVE RLKRDKNVLM QELVRLRQQQ  180
QTTDSQMQTM LQRLQGMEQR QQQMMSFLAK AVQSPGFLAQ FVQQQSESNR RISEANKKRR  240
LKQDGASETE NSSLADGQIV KYEPLGRQLR NLEESFSGNS DRFFIGDSAS THAMESVSPT  300
NRISEVPATS GAAYLPNSEI SDLRSTPVTA GFETTSTPVV VTTEAANPVT VVHMDSILPE  360
LSSIPDAVPK SDDIRRVDYL VSETGDNEFM DLSSMEINGT LPLDFSIDFD IDKLSPDPDI  420
ESFLNDSAWD PYFNQNLNLP GSNEAELATP ESLPKGQEGP RPENGWDKRQ NVDQLTEQMN  480
LLNSDNNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-252712418129Heat shock factor protein 1
5d5v_B1e-252712418129Heat shock factor protein 1
5d5v_D1e-252712418129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235242NKKRRLKQ
2236241KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677345.10.0PREDICTED: heat shock factor protein HSF8
SwissprotQ401521e-145HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0K9RJS20.0A0A0K9RJS2_SPIOL; Uncharacterized protein
STRINGXP_010677345.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-105heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]