PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca57217.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HD-ZIP

Protein Properties

Length: 849aa MW: 93550.4 Da PI: 6.1449

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca57217.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.8e-19	112	167	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF++ ++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Dca57217.1 112 KKRYHRHTARQIQEMEALFREFPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 167 688899***********************************************998 PP
2	START	110.6	2.5e-35	323	537	2	206
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT... CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg... 88 la + ++el+++ a+ep+Wv+ e +n +e+ + f ++ +++ea r++ +v+m++ +lv +ld + +W e ++ +a+t++v+ +g Dca57217.1 323 LAMSSMDELLRMCHANEPLWVRNNnsiEVLNMEEYSRMFNWQHYseFKTEATRETSLVIMNSINLVDAFLDAN-KWVELFPsmvsRAKTIQVLATGvsg 420 677899**************9998888999999999988777999**********************.99999999999********** PP ...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 89 ...galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 g l+lm+aelq+lsplvp R+ f+Ry q +g w+ivd vds + + s+ + +++pSg+li++++n h +v l+++ h+++ Dca57217.1 421 hpsGSLHLMYAELQVLSPLVPtRETHFLRYVHQnIDEGMWAIVDFPVDSFNGSLQlSHTMPQYRRRPSGCLIQDMANEHGQV-------LDEKPTHQIF 512 *********************************************999888999999999**********9999.......899999 PP HHHHHHHHHHHHHHHHHHTXXXXXX CS START 182 rslvksglaegaktwvatlqrqcek 206 + v++g+a+gak+w a lqrqce+ Dca57217.1 513 DQYVRNGMAFGAKRWIAVLQRQCER 537 *********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.24E-19	92	170	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-20	105	174	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.167	109	169	IPR001356	Homeobox domain
SMART	SM00389	6.5E-17	110	173	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-16	112	167	IPR001356	Homeobox domain
CDD	cd00086	9.10E-18	112	170	No hit	No description
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	33.523	313	540	IPR002913	START domain
SuperFamily	SSF55961	5.36E-23	314	539	No hit	No description
CDD	cd08875	1.11E-96	317	536	No hit	No description
SMART	SM00234	1.6E-22	322	537	IPR002913	START domain
Pfam	PF01852	1.8E-27	323	537	IPR002913	START domain
SuperFamily	SSF55961	4.26E-17	555	734	No hit	No description
SuperFamily	SSF55961	4.26E-17	762	800	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence Send to blast
MYGDCQVALP TSMGGSTTNV ENGDLFSSPI RNPNNNVNAF SFMASLPAAF HPFSSSSLPV 60 KEERGKEDML ESMSGSELNL EGQGGVSGNE FDSLSGGDPS LPPSSSQPAN KKKRYHRHTA 120 RQIQEMEALF REFPHPDDKQ RMKLSQELGL KPRQVKFWFQ NRRTQMKAQQ DRTDNVILRA 180 ENDNLKHENY RLQAVLRSLV CPGCGGGSIL GEVEYDEQQL RLENARLKEE LDRVCAIASR 240 CSGQRMMQSL GPPPPPHLLS PPPSLDLDMS IYSRHFHEPM PSSNQMLPMP LLPDTTTPFS 300 TGNNNNVNVG LIMDEERPLA MELAMSSMDE LLRMCHANEP LWVRNNNSIE VLNMEEYSRM 360 FNWQHYSEFK TEATRETSLV IMNSINLVDA FLDANKWVEL FPSMVSRAKT IQVLATGVSG 420 HPSGSLHLMY AELQVLSPLV PTRETHFLRY VHQNIDEGMW AIVDFPVDSF NGSLQLSHTM 480 PQYRRRPSGC LIQDMANEHG QVLDEKPTHQ IFDQYVRNGM AFGAKRWIAV LQRQCERVAS 540 LMARNISDHG AIQSPEARKN FMKLSQRMIR TFCVNISTSG GQSWTALSES SDDTVRITTR 600 KIVEPGQPTG LILCAVSTTW LPYSHDQVFD LLKNEHRRSQ IEALSNGSSL HEVAHIANGS 660 HPGNCISLFR INVASNSSQN VELMLQESCT DSSGSLVVYA TMEVDYIQLV MSGEDPSCIP 720 LLPMGFSIIP LGPSANNNVS EGTNSVVDGQ DSSSHHQHPS SGCLLTVGLQ VHVSTVPNAK 780 LNLSSVTAVN NHICSMVQQI VVALGNSNAG CSTSAGTSNN NASACPTAAT NAAGSVVGSY 840 PEPNNALPQ

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence Send to blast

MYGDCQVALP TSMGGSTTNV ENGDLFSSPI RNPNNNVNAF SFMASLPAAF HPFSSSSLPV  60
KEERGKEDML ESMSGSELNL EGQGGVSGNE FDSLSGGDPS LPPSSSQPAN KKKRYHRHTA  120
RQIQEMEALF REFPHPDDKQ RMKLSQELGL KPRQVKFWFQ NRRTQMKAQQ DRTDNVILRA  180
ENDNLKHENY RLQAVLRSLV CPGCGGGSIL GEVEYDEQQL RLENARLKEE LDRVCAIASR  240
CSGQRMMQSL GPPPPPHLLS PPPSLDLDMS IYSRHFHEPM PSSNQMLPMP LLPDTTTPFS  300
TGNNNNVNVG LIMDEERPLA MELAMSSMDE LLRMCHANEP LWVRNNNSIE VLNMEEYSRM  360
FNWQHYSEFK TEATRETSLV IMNSINLVDA FLDANKWVEL FPSMVSRAKT IQVLATGVSG  420
HPSGSLHLMY AELQVLSPLV PTRETHFLRY VHQNIDEGMW AIVDFPVDSF NGSLQLSHTM  480
PQYRRRPSGC LIQDMANEHG QVLDEKPTHQ IFDQYVRNGM AFGAKRWIAV LQRQCERVAS  540
LMARNISDHG AIQSPEARKN FMKLSQRMIR TFCVNISTSG GQSWTALSES SDDTVRITTR  600
KIVEPGQPTG LILCAVSTTW LPYSHDQVFD LLKNEHRRSQ IEALSNGSSL HEVAHIANGS  660
HPGNCISLFR INVASNSSQN VELMLQESCT DSSGSLVVYA TMEVDYIQLV MSGEDPSCIP  720
LLPMGFSIIP LGPSANNNVS EGTNSVVDGQ DSSSHHQHPS SGCLLTVGLQ VHVSTVPNAK  780
LNLSSVTAVN NHICSMVQQI VVALGNSNAG CSTSAGTSNN NASACPTAAT NAAGSVVGSY  840
PEPNNALPQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677365.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X2
Refseq	XP_010677366.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X2
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A0K9RGC1	0.0	A0A0K9RGC1_SPIOL; Uncharacterized protein
STRING	XP_010677364.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]