PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57266.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 650aa    MW: 73390.7 Da    PI: 8.8811
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57266.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08443483346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eE e   ++++++G++ W++ a ++g  R + ++k+ +++
       Dca57266.1 443 TWTKEELEEVRKYHEKYGPK-WRALADELG--RNRIHVKDAFRQ 483
                      6*****************99.********8..999999987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-4366429IPR009057Homeodomain-like
SMARTSM007170.17366438IPR001005SANT/Myb domain
PROSITE profilePS512949.216437489IPR017930Myb domain
SMARTSM007178.1E-4440487IPR001005SANT/Myb domain
SuperFamilySSF466892.93E-8441502IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-8443495IPR009057Homeodomain-like
CDDcd001670.00248443471No hitNo description
PfamPF139212.2E-10444502No hitNo description
PROSITE profilePS500908.049486554IPR017877Myb-like domain
SMARTSM007170.031490556IPR001005SANT/Myb domain
CDDcd001670.00553494552No hitNo description
Gene3DG3DSA:1.10.10.601.1E-7496558IPR009057Homeodomain-like
SuperFamilySSF466892.0E-6534616IPR009057Homeodomain-like
PROSITE profilePS500906.864562609IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MGEIREGVSE SVTKKKHKKR KSDESRVVGV EESGVVELDE GGSRKKGKTD VVGVKGLESD  60
VRVDIGAKEG ENGLMVEDTN RSDKKKKKKH QKVERSGSGD VSGDLKGTEV ASGMNGGNLS  120
METREKACVE DAKMIEVDKV KKKGKKEKSK KSKVESSSIG GDDIGPNEVA GHMSSSKKTI  180
VSESTEEVEQ VKKKKKKQKE DVCEVTEIEE RAKGKKPKKN KSDVGTVSVD GELKKNTHVP  240
TNSDGESTKD KVGKKRKQKS VGNSENNASA GAAVSNEDHE VTEPFENSNL KKKKTPKKVK  300
FADSIEVFSI PDTCGEGEEN TVDGGNSSKV KKGLVESEKE DLVSGSKSSQ KARKPKDGNE  360
ETNLVRGKRF TKEEDELIRN AVLKYIEDRR LGEDGLKMVL KCKTHGEKVK DCWNVIMEAV  420
PWRHKQAIYC RAHILFERSE NRTWTKEELE EVRKYHEKYG PKWRALADEL GRNRIHVKDA  480
FRQVRLPDKK SGHWSQEEYQ KLFDLVNKDL RIRANMDRKS QHGMLRDNIG WEAISKNLTT  540
RTDPVCCMKW YNQLTSSLVV SGMWADTDDY RLLMALDELD ATCEEEVEWD HLLEHRSGDV  600
CRKRWSEMVR HIGEHGKKSF SEQVETLSQR YCPDVLDARE TYDSKPFVDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682330.11e-152PREDICTED: DNA-binding protein REB1-like isoform X1
RefseqXP_010682331.11e-152PREDICTED: DNA-binding protein REB1-like isoform X1
RefseqXP_010682332.11e-153PREDICTED: cyclin-D-binding Myb-like transcription factor 1 isoform X2
TrEMBLA0A0K9RAV41e-142A0A0K9RAV4_SPIOL; Uncharacterized protein
STRINGXP_010682330.11e-152(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-112MYB_related family protein