PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57295.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 190aa    MW: 21795.7 Da    PI: 6.7115
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57295.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.31.2e-0863144789
        FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 A+ +GF ++ks++k +   g    +  +C k gk +   k+  ++ +r+++++++++C  k+k+   +dgk+ v+ +   HnHe+
  Dca57295.1  63 AHGLGFGLCKSSNKPR---GIREYHLIRCEKGGKYNGPFKDplKVPKRKKTTSKKIECPFKIKIVFGTDGKFAVMPMYGFHNHEM 144
                 8899******998877...655567789******99988888899**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-663144IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSTTADDEIN DGDYEGDDQW DLGDDNISVD QLIGDGIDYS FHFMNTLCFE NMKMAYTWAQ  60
AIAHGLGFGL CKSSNKPRGI REYHLIRCEK GGKYNGPFKD PLKVPKRKKT TSKKIECPFK  120
IKIVFGTDGK FAVMPMYGFH NHEMGKFFDC HHQMTSFSDE QIDYVRVHVV SEIKTANIRL  180
GFKEKYPDQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-