PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca57458.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 164aa MW: 18224.7 Da PI: 3.9545

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca57458.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.6e-10	14	43	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rgrWT+eEde+l +++ ++G g+W++ ++ Dca57458.1 14 RGRWTEEEDERLTNYILEHGQGSWRSLPKN 43 8************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-11	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.23E-7	8	43	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.166	9	46	IPR017877	Myb-like domain
Pfam	PF00249	1.7E-7	14	43	IPR001005	SANT/Myb domain
CDD	cd00167	5.27E-4	16	43	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGRAPCCEKV GLRRGRWTEE EDERLTNYIL EHGQGSWRSL PKNAENDVSP IGPNEVNGLS 60 NVGPVGDDQV QCNGGSNGGE SSSSSSSPST LTSFDHGFDG VNWEREMNMV DEIGLGNDRY 120 TEKEQLISWL WENEDNYFEK NVFSDVVADV DSQTEEAMVA WLLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	2e-19	myb domain protein 12