PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57516.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family SBP
Protein Properties Length: 225aa    MW: 24781.5 Da    PI: 9.5679
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57516.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.31.4e-4082157176
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                 +Cq+e+C  dl+e k+yhrrhkvCe+hskap+vlv gl+qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk+
  Dca57516.1  82 CCQAEKCGIDLTESKRYHRRHKVCEFHSKAPSVLVCGLRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKN 157
                 6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-3378144IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.90680157IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-3781159IPR004333Transcription factor, SBP-box
PfamPF031104.5E-3183156IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDLQNTNTKL MMMKDDKSHQ KPSSKHATED DHHAFSDDNM EDGHQPRVAV ALAAAAEVVE  60
KKAKRPAAAG AGGGWGGGTG ICCQAEKCGI DLTESKRYHR RHKVCEFHSK APSVLVCGLR  120
QRFCQQCSRF HELSEFDEAK RSCRRRLAGH NERRRKNLSE PQGEGGSSSR AKPSSSTTTS  180
STGNPQCRPA DHVANRAQMT TTYSSSSPTT TTTTTTNYSK HYQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3674156184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00359DAPTransfer from AT3G15270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675500.11e-52PREDICTED: squamosa promoter-binding-like protein 4
TrEMBLA0A061F8523e-47A0A061F852_THECC; Squamosa promoter binding protein-like 3 isoform 1
STRINGXP_010675500.14e-52(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.14e-38squamosa promoter binding protein-like 5