PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57560.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 215aa    MW: 23689.9 Da    PI: 10.7658
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57560.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.34.8e-11191213325
                 -SS-EEEEEEE--TT-SS-EEEE CS
        WRKY   3 DgynWrKYGqKevkgsefprsYY 25 
                 D y+WrKYGqK++kgs++pr  Y
  Dca57560.1 191 DDYSWRKYGQKPIKGSPHPRYVY 213
                 99******************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-16148187IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.1E-11177213IPR003657WRKY domain
PROSITE profilePS5081113.104184215IPR003657WRKY domain
SuperFamilySSF1182905.89E-9186213IPR003657WRKY domain
PfamPF031066.0E-8191213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MALDFMVNNN SRTASSLDEA VVHEASAGLR SVHNFLQLLS LPEISPSFRN ANNNNDNNYT  60
KSTAVVEIDR NCRAVADDAV SRFRNVISLL GRARSGHARF RRGPGPGPAR NGVVLCPDPI  120
QQVKDYSGVI TSVGRPPLSH TTSFKGRKCV SEHGKCGSSG RCHCSKKRKT KLKRTVRIPA  180
ISTKMADIPP DDYSWRKYGQ KPIKGSPHPR YVYTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205552.14e-58probable WRKY transcription factor 7
TrEMBLM5W0569e-57M5W056_PRUPE; Uncharacterized protein
STRINGEMJ067511e-57(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.21e-28WRKY DNA-binding protein 15