 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Dca57564.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
| Family | bHLH | ||||||||
| Protein Properties | Length: 192aa MW: 21958.4 Da PI: 4.552 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 15.7 | 2.7e-05 | 144 | 170 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
HLH 4 ahnerErrRRdriNsafeeLrellPka 30
h ++Er+RR+ + + f L l+P +
Dca57564.1 144 DHIMAERKRRQTLSQQFIALSALVPGL 170
699**********************86 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.31E-6 | 131 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.9E-5 | 144 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 192 aa Download sequence Send to blast |
MDAWLSELEM AWNEEPILND HPIDEMNTLG EELALVLGED FYSIDGQNTI TSIFDNSNSQ 60 NTQINLSDTS VIQNVDKHDD KNNKDGTYYT PKPIDEPKIV EIQQSPQNEN NLNDDENGVK 120 EASDDQQGTK GGKRKRRDPG QVQDHIMAER KRRQTLSQQF IALSALVPGL KKVRYLLSLS 180 FRFCRYLSRC IL |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 134 | 152 | KRRDPGQVQDHIMAERKRR |
| 2 | 148 | 153 | ERKRRQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G22750.1 | 2e-13 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|