PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57568.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 695aa    MW: 76333.6 Da    PI: 6.259
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57568.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11146191454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h ++Er+RR+ + ++f  L  l+P +     kK++K +iLe+A++++k++
  Dca57568.1 146 DHIMAERKRRQTLSQRFIALSALVPGL-----KKVDKTSILEEAIKHLKQM 191
                 699************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.70E-12135196No hitNo description
PROSITE profilePS5088814.342142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-9146191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-13146202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14146205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-12148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
METWLSELEM AWNEEPILND HPIDEMNTLG EELALVLGED FYTIDGQNTI TSIFDNNSNS  60
QNTQINLSDT SPVNQNVDKH DDKNNKDGTY YTPKPIDEPK IVEIQQSPQN ENNLSDDENG  120
VKEGSDDPQG TKCGKRKRRD PGQVQDHIMA ERKRRQTLSQ RFIALSALVP GLKKVDKTSI  180
LEEAIKHLKQ MKERVETLEK AASKQIVRPM TVVKRTQLVV DDDTESDSSI DNPNCIIDDT  240
CYDNQSRIIP DIEVKVSHKT MVVRICCARR TGILGTVCKE VEDCRFSILN CSAIAFGSSA  300
VDITVVAEME AAKGYDKKLK NLIKNLNSTL RILERIVTAG GPGFGDWQWR LATLPFRLGG  360
LGVYAAGDVI HYAFLASRLQ SAELQAQLLR SSGIMASGPA FDDALQGFTE ITGSVFPRDP  420
SEIAAPKLMK KLADIYFAKV AGSADSIFSL SPRQIALWRS QQGAHSSDWL RAVPITGLGQ  480
TMNGRTYRCV LGYRLGIPLF SVSRPCSACS RVFAEDVYGD HAVSCAGTVG VKHRHNLVRD  540
TLLDICYWSG ISAGKEVDIG LVDDHGGSLR PADLLLYSWD RGRDVCVDLT GSSPLTQTGL  600
AEFVSGRVVA DAARRKCAKY RDSCAAAGYG FLPFSFTTLG ELDSEAVALL KRIQNFSASH  660
EAGARMSAYI FVRLGFAVAK GVGAQIVSRL PTNFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136154KRRDPGQVQDHIMAERKRR
2150155ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-39bHLH family protein