PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca57659.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 996aa MW: 110507 Da PI: 4.5913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca57659.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9e-05	33	55	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 kC++C+++F+ k++L +H+ + H Dca57659.1 33 KCHKCSTPFNEKDELLKHLIScH 55 8******************9955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.369	32	60	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.54	32	55	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	34	55	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.076	77	99	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MHLNISPNLE NRVTPSKDVQ LGEVHELSTS ALKCHKCSTP FNEKDELLKH LISCHKRKRR 60 KAGVYIENDD LLKDGKYECQ FCDKVYLDRG SYFGHVGIHV KNYLKSAGGS SSVKAKQNTF 120 KPVSIGEVSL SVSETLGSTE LIAESGAGTQ NMLGNGELNN DCIEKKITAP DAERLSENEK 180 NDHSSYTRPM ELNAAQTDKT LDCESSGKQE AADHIANKNT REVDCTNKNT TEVDCPGSDK 240 VVLDYSDNYQ EIISSEFVSP EAIERPPVVA ENSEAYLSSD SKLSDFGADS SFVTENVLET 300 EERLTSEFDL AAGNEGKSSN QSFAKCYLVN NPVERYCYDE EVNVMHHQGL IEVSGSGHID 360 VDMVDEDDIK GLESMEESSA VPFTAEESCG VIMNKTENIE SKVSTLSDDQ QTKTLMVNKR 420 HEFADLVNET EVDLSSFENT ELTDDYERII QERHCESNVQ FYSKDNVSNY SSNEAVRGSN 480 VKMVQPSGVR DFQQFKHSCS TENNTGEVLN KQGEEHTGNL FFLSRSRDSH LDTTDITNTD 540 QSHNHVPDVL WSFDSYVDDK QAQVSKSLFY ALSMNEHSRE VAMNDVGNVS TSTTTMHLPE 600 LEKVDSSRSS NLLLDFNNIT EMNGNFLSSA QHGAVPEETS PFQLWGQQSN GLVDSQTKVY 660 GGGSTFLQQA RASQNNSLNL VGHQRQSTEG YNLNEVCMNE QRYGQRNKLG VFSRNNEART 720 EGISHGNALN LAGYQQQCDL GYNLNKPCIS QQSYGVQHTE SGSYNHLNQA RQDRVAYGNS 780 LSLASVQQCD SRYSLNKTRD QQPVDTGYSL NKGYVDSRDR DLMIGFGNSG GRRNQTGTTD 840 FLWGSNDGSI LPGGLVDSSS SQAQSSGSFQ PFDFLSDKSG NDLYNANGKF DNMSSFEGLR 900 SSVEPMEFSF MTPQESNPQL EHPKVLQYNT EINQSFGSWD QKTTTLPNMM PNHVVSVMCV 960 WCGNEFHQDS LSCEMQAGSI GSLCPSCKAR MSGQFL

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MHLNISPNLE NRVTPSKDVQ LGEVHELSTS ALKCHKCSTP FNEKDELLKH LISCHKRKRR  60
KAGVYIENDD LLKDGKYECQ FCDKVYLDRG SYFGHVGIHV KNYLKSAGGS SSVKAKQNTF  120
KPVSIGEVSL SVSETLGSTE LIAESGAGTQ NMLGNGELNN DCIEKKITAP DAERLSENEK  180
NDHSSYTRPM ELNAAQTDKT LDCESSGKQE AADHIANKNT REVDCTNKNT TEVDCPGSDK  240
VVLDYSDNYQ EIISSEFVSP EAIERPPVVA ENSEAYLSSD SKLSDFGADS SFVTENVLET  300
EERLTSEFDL AAGNEGKSSN QSFAKCYLVN NPVERYCYDE EVNVMHHQGL IEVSGSGHID  360
VDMVDEDDIK GLESMEESSA VPFTAEESCG VIMNKTENIE SKVSTLSDDQ QTKTLMVNKR  420
HEFADLVNET EVDLSSFENT ELTDDYERII QERHCESNVQ FYSKDNVSNY SSNEAVRGSN  480
VKMVQPSGVR DFQQFKHSCS TENNTGEVLN KQGEEHTGNL FFLSRSRDSH LDTTDITNTD  540
QSHNHVPDVL WSFDSYVDDK QAQVSKSLFY ALSMNEHSRE VAMNDVGNVS TSTTTMHLPE  600
LEKVDSSRSS NLLLDFNNIT EMNGNFLSSA QHGAVPEETS PFQLWGQQSN GLVDSQTKVY  660
GGGSTFLQQA RASQNNSLNL VGHQRQSTEG YNLNEVCMNE QRYGQRNKLG VFSRNNEART  720
EGISHGNALN LAGYQQQCDL GYNLNKPCIS QQSYGVQHTE SGSYNHLNQA RQDRVAYGNS  780
LSLASVQQCD SRYSLNKTRD QQPVDTGYSL NKGYVDSRDR DLMIGFGNSG GRRNQTGTTD  840
FLWGSNDGSI LPGGLVDSSS SQAQSSGSFQ PFDFLSDKSG NDLYNANGKF DNMSSFEGLR  900
SSVEPMEFSF MTPQESNPQL EHPKVLQYNT EINQSFGSWD QKTTTLPNMM PNHVVSVMCV  960
WCGNEFHQDS LSCEMQAGSI GSLCPSCKAR MSGQFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	60	KRKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021740226.1	0.0	uncharacterized protein LOC110706595
TrEMBL	A0A0K9RTD1	0.0	A0A0K9RTD1_SPIOL; Uncharacterized protein