PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca57886.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 464aa MW: 49444.1 Da PI: 10.1299

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca57886.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.6	3.5e-15	387	438	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe+++++L++eN++L+k+ e+ ++ Dca57886.1 387 RRQRRMIKNRESAARSRARKQAYTMELEQEIAKLKEENQELRKKQAEIVEMQ 438 79****************************************9977776664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	1.31E-5	242	287	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.3E-14	379	445	No hit	No description
SMART	SM00338	7.5E-13	383	447	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.473	385	434	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-12	387	439	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.36E-27	387	441	No hit	No description
SuperFamily	SSF57959	1.31E-10	387	436	No hit	No description
PROSITE pattern	PS00036	0	390	405	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MASNLNFNNF GSDPPVDGSG RPPGSGNFPL IRQSSIYSLT FDEFQNTLGG LGKDFGSMNM 60 DELLKNIWSA EETQSMATAA SAVNAAAAAA ASASAQEGGG YLQRQGSLTL PRTLSQKRVD 120 EVWKDIAKDF GGGKDGGGGG GGSNVPQRQQ TLGEMTLEEF LVRAGVVRED PQPFGKPNLG 180 GCGIFGDLPR SNDDGESGFG INFQQPGGQG VDLLGNRMLG NNNQINIQAT NLPLNVNGVR 240 TSQQQATQTQ LGPQPLQQQI QQQQQQQQQQ QQQQRPQPIF PKQPGVSYGN AQLGSPRIGG 300 GVVGLGDPGM NNNIMPNSGL QGGGGMGMIG LGGGAGGVPV GSPATLSSNG LAKSNGDTSS 360 VSPLPYVFNG GFRGRKSGNS VDKVVERRQR RMIKNRESAA RSRARKQAYT MELEQEIAKL 420 KEENQELRKK QAEIVEMQKN QVQEMMNAQS GPRKRLRRTQ TGMW

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MASNLNFNNF GSDPPVDGSG RPPGSGNFPL IRQSSIYSLT FDEFQNTLGG LGKDFGSMNM  60
DELLKNIWSA EETQSMATAA SAVNAAAAAA ASASAQEGGG YLQRQGSLTL PRTLSQKRVD  120
EVWKDIAKDF GGGKDGGGGG GGSNVPQRQQ TLGEMTLEEF LVRAGVVRED PQPFGKPNLG  180
GCGIFGDLPR SNDDGESGFG INFQQPGGQG VDLLGNRMLG NNNQINIQAT NLPLNVNGVR  240
TSQQQATQTQ LGPQPLQQQI QQQQQQQQQQ QQQQRPQPIF PKQPGVSYGN AQLGSPRIGG  300
GVVGLGDPGM NNNIMPNSGL QGGGGMGMIG LGGGAGGVPV GSPATLSSNG LAKSNGDTSS  360
VSPLPYVFNG GFRGRKSGNS VDKVVERRQR RMIKNRESAA RSRARKQAYT MELEQEIAKL  420
KEENQELRKK QAEIVEMQKN QVQEMMNAQS GPRKRLRRTQ TGMW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	GGKDGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021716588.1	1e-179	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-124	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	N0DR69	0.0	N0DR69_DIACA; ABA responsive element binding factor
STRING	XP_010685236.1	1e-168	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	3e-51	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]