PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57896.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARF
Protein Properties Length: 688aa    MW: 75571 Da    PI: 7.1005
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57896.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.8e-23127228199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +   ++ +d +g+ W++++iyr++++r++lt+GW+ Fv+a++L +gD++vF +   +++ l
  Dca57896.1 127 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NIIAKDVHGEPWKFRHIYRGTPRRHLLTTGWSTFVNAKKLIAGDSIVFLR--ADNGDL 221
                 89*****************************97656666..69***********************************************3..477888 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  Dca57896.1 222 CVGIRRA 228
                 ****996 PP
2Auxin_resp109.92.6e-36294377183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa  a+++++Fe+vY+Pra+t+eFvvk+ +v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dpv+W++S+Wr+L+
  Dca57896.1 294 AAACAAKGEIFEIVYYPRAGTPEFVVKAGQVKAALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPVHWSDSPWRLLQ 377
                 5677899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-29119230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-37120230IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-21126227No hitNo description
PROSITE profilePS5086313.07127229IPR003340B3 DNA binding domain
SMARTSM010198.4E-22127229IPR003340B3 DNA binding domain
PfamPF023621.4E-21127228IPR003340B3 DNA binding domain
PfamPF065072.6E-31294377IPR010525Auxin response factor
PROSITE profilePS5174514.687602682IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MITFMDPKEK VKDGRNCLDS QLWHACAGGM VQMPQVNAKV YYFVQGHIEH ASGSGSGSGS  60
VDFRNFPRIP PYVLCRVQDI RYLADLETDE VYAKLRLIPV GNEPDLVAND VGVRGNEIQD  120
SNKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQNIIAK DVHGEPWKFR  180
HIYRGTPRRH LLTTGWSTFV NAKKLIAGDS IVFLRADNGD LCVGIRRAKR GIGGGLDASS  240
GWNPGASALG YGAFAAFMRD DEGRIGRNGN PSVANSGGNM TSKSKVKIES VVEAAACAAK  300
GEIFEIVYYP RAGTPEFVVK AGQVKAALQI RWCSGMRFKM PFETEDSSRI SWFMGTISSV  360
QVADPVHWSD SPWRLLQVTW DEPDLLQNVK RVSPWLVELV SNMPTIHFSP LSHPRKKFRL  420
PHHPDFPMDG QLSAPPYPGN FLGSSNPFGC LPDNSPAGMQ GARHAHFGLS LSDLHMSKLQ  480
SGLFPSMDPL TTLSNKPSTS LSFQKPSNNN SDSISCLLTM GSSNQTVRRS DEPKPHQFVL  540
FGKAIVTEHQ VSPVRTSNSS SEGNGDKAGN FSDNSGSAHN QDERLPWLIK DNRHEHDSEL  600
DTGHCKVFME SEDVGRTLEL TLLSSYEELC SRLAHMFGIE NSDMISRVIF HDGTGFSKQI  660
GDEPFGEFAK RAKRLTILTD SSSDNVAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-84339832388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021760126.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0K9R0A20.0A0A0K9R0A2_SPIOL; Auxin response factor
STRINGXP_010684071.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]