PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca57972.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

M-type_MADS

Protein Properties

Length: 170aa MW: 18909.1 Da PI: 3.9195

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca57972.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.3	8.6e-13	14	43	13	42
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss 42 f R+++i+K A ELSvLC+++va+i++ + Dca57972.1 14 FQPRKTTIFKSARELSVLCGVDVALIMYDH 43 667************************966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0033	4	53	IPR002100	Transcription factor, MADS-box
CDD	cd00120	6.68E-12	14	51	No hit	No description
PROSITE profile	PS50066	10.386	14	41	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.49E-12	14	72	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-10	14	45	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MVNFGCSKPP LKGFQPRKTT IFKSARELSV LCGVDVALIM YDHGNTNPEV WCSKPGSIDT 60 IINRAYGKTI VPLNPAQDST DLIIHREGLN DYDDWIDMID FSTDGLELDF LCHEIGVDDC 120 NGNAIGFCEG GVDDDNVDEA KTSDYEFEWF NQLMSYNGDD LASLYSLISC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	2e-07	M-type_MADS family protein