PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca58080.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 669aa MW: 73602.6 Da PI: 6.8767

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca58080.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	70	91	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F + n++rH+r+H Dca58080.1 70 KCGKCSREFCSTINYRRHLRVH 91 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.411	69	96	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MAQTKIEAAN QMKSDNGDAN IDALIRQTIG REPFSRANES SFQLNQLLYD PSALLPAWPV 60 YPSMKIQMQK CGKCSREFCS TINYRRHLRV HRRKLNHDKD SATKYRGLLQ AFWDKLSVEE 120 AMEIMALDDF FLGVTSGSLI VKSLASFVRK SLYTSLPQSY VKSGGILLDI VQGRPTRFPV 180 SSQELFDVLD NASENTFLCG GTAELVQKFV FNGDAGQIGL EMRNLIACTS FLVEQKLVKA 240 CLAYKDAEAL RYQKLLVDEE EAAHKRQAAL LEKKRLKKLR QKEQRAKELP NVETDETPEN 300 SPPSPPSSRS ADDDGDAILE TPEIPPEIEH SQPLHVGDII EEQENRNPDF GAPQKEIPDS 360 GGHQNLEHRR SHRDGQRQVV NGRWQAPKSH RYPNGFNTSH NYQAPKPGTS QKRATNGTKV 420 WSVKPKIENT EGNSKLKSVI EPPKPPCQER KLLIGSIPVP LGNRSNIQGQ VSDVRGASDS 480 SASELSVSGE NGAGKKPAEG DGNQGSADCS AVTLSGAVGR QDDGSQLTIC NDAGATKVVR 540 VVISDNEVVR ATDVVQSTSN GLEDKFDLCV EGGHQGGFSS DLAEAFLSQR WKEAITGDHV 600 ELVLFQEGPL VYSVAQDGRN QEAVLSLKSD ENIILRTAEN HPQVYVTIDP STTVKSRARV 660 KSQRGAIVK

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MAQTKIEAAN QMKSDNGDAN IDALIRQTIG REPFSRANES SFQLNQLLYD PSALLPAWPV  60
YPSMKIQMQK CGKCSREFCS TINYRRHLRV HRRKLNHDKD SATKYRGLLQ AFWDKLSVEE  120
AMEIMALDDF FLGVTSGSLI VKSLASFVRK SLYTSLPQSY VKSGGILLDI VQGRPTRFPV  180
SSQELFDVLD NASENTFLCG GTAELVQKFV FNGDAGQIGL EMRNLIACTS FLVEQKLVKA  240
CLAYKDAEAL RYQKLLVDEE EAAHKRQAAL LEKKRLKKLR QKEQRAKELP NVETDETPEN  300
SPPSPPSSRS ADDDGDAILE TPEIPPEIEH SQPLHVGDII EEQENRNPDF GAPQKEIPDS  360
GGHQNLEHRR SHRDGQRQVV NGRWQAPKSH RYPNGFNTSH NYQAPKPGTS QKRATNGTKV  420
WSVKPKIENT EGNSKLKSVI EPPKPPCQER KLLIGSIPVP LGNRSNIQGQ VSDVRGASDS  480
SASELSVSGE NGAGKKPAEG DGNQGSADCS AVTLSGAVGR QDDGSQLTIC NDAGATKVVR  540
VVISDNEVVR ATDVVQSTSN GLEDKFDLCV EGGHQGGFSS DLAEAFLSQR WKEAITGDHV  600
ELVLFQEGPL VYSVAQDGRN QEAVLSLKSD ENIILRTAEN HPQVYVTIDP STTVKSRARV  660
KSQRGAIVK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	278	EKKRLKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010671848.1	0.0	PREDICTED: uncharacterized protein LOC104888530 isoform X1
TrEMBL	A0A0K9RXQ1	0.0	A0A0K9RXQ1_SPIOL; Uncharacterized protein
STRING	XP_010671848.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	7e-84	C2H2-like zinc finger protein