PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca58088.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 586aa    MW: 66466.7 Da    PI: 5.0989
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca58088.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.6e-21231061099
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ++  + + +p  f+++ +++   ++++ l+d+sg++W+v l   +k+g++++++GW++Fv+++g++ gD vvF++ ++s+f  +v vf +
  Dca58088.1  23 NNFDNFMQVPPAFVKKVKSE--IGRKVFLQDSSGQQWDVSL--INKRGSFFFKTGWRNFVQDHGIQMGDLVVFYYCKDSDF--LVEVFGR 106
                 334466999*****999755..7889***************..9999*****************************99***..9999987 PP
2B347.82.7e-154985841498
                 T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  14 grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 + lvlp +   +         +++  + l+d+sgr W + +   +ksg  vlt+GWkeF kan+++ gD ++F++++++e+ l+v v+ 
  Dca58088.1 498 NFLVLPGPLPLTVrvdrRRTRPKQLLVLLKDSSGRIWPLIY--HNKSGFKVLTSGWKEFMKANNIQPGDECIFTVENSEEALLNVEVVP 584
                 5555555553333445533344667899*************..*******************************887788878888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.05814107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-2414109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2315109IPR015300DNA-binding pseudobarrel domain
CDDcd100179.45E-2016104No hitNo description
SMARTSM010193.9E-1616107IPR003340B3 DNA binding domain
PfamPF023628.7E-1916106IPR003340B3 DNA binding domain
PfamPF023627.0E-13493584IPR003340B3 DNA binding domain
SMARTSM010190.0068499586IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-13517578IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-13519576IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.21524586IPR003340B3 DNA binding domain
CDDcd100179.16E-10524569No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MHKRKHGEPS SLGSAFFKIM FGNNFDNFMQ VPPAFVKKVK SEIGRKVFLQ DSSGQQWDVS  60
LINKRGSFFF KTGWRNFVQD HGIQMGDLVV FYYCKDSDFL VEVFGRSGCL QRYDNLDDAA  120
ADEAARSSVP LKRSRDLPFE QSSRKKRFLS SDVSDSDPDV VRRPSNVAFV EEPVVVARKA  180
PTESQAREWS RKNVEEPVIM ARKPRTEWQA RERSSMVEPS FTSHRDKNRP EVVPETVVEP  240
CFTASRDQNR RKVLPEVEIL ADPCFIPTRD KNVVSEHGRE CLFDLSAFEM PSHKSTTMDV  300
GEETEARLDL STYELPQIET CGVKTMESNQ VLSVIAEDVP TMDRDDNTDG FLPDMSFFNF  360
PEYECAIVGD KGDLQEKQHG QESDKCQNTA IEDASDNLMN RNISEKANEE LSSEPREAEL  420
RRRDDAPITS KSPTVDLPTD PIAQANSSRE KSLSGEINSM VKIEADVHPF VKHEPVDYDV  480
PSENGVKMTC PVPRGTENFL VLPGPLPLTV RVDRRRTRPK QLLVLLKDSS GRIWPLIYHN  540
KSGFKVLTSG WKEFMKANNI QPGDECIFTV ENSEEALLNV EVVPRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-13B3 family protein