PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca58095.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 762aa MW: 88519.8 Da PI: 7.3808

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca58095.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.1	6.2e-18	51	144	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA +GF+vr+ ++kk ++g+ +++ vC++eg ++++k+ ++k++r++++t +gCka++++ + +g+ ++++++ eHnHel+ Dca58095.1 51 SFYRIYALACGFDVRRYSEKKW-DDGTLKTKLIVCNREGIYRPNSKDveeensADKRSRRTTVTPIGCKARIRLFLF-KGVLKIDRFVAEHNHELV 144 59*************98887.8888*************99999998877888899999******999.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-14	51	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.9E-29	266	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.348	548	584	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-6	556	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-4	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence Send to blast
MQEIEQLSVI EGTNDVPNVP VIEEGDFCET VEKDFTPFVG QEFISVDEAY SFYRIYALAC 60 GFDVRRYSEK KWDDGTLKTK LIVCNREGIY RPNSKDVEEE NSADKRSRRT TVTPIGCKAR 120 IRLFLFKGVL KIDRFVAEHN HELVTVENRE FQKLSSSLSE YHKFFIVSNM RLNIGASKTY 180 RMMKEYVNGY ENIGASLNHF KNFQRDIKCF IHERDGQLFV DRFKVMGENK ADFYFDYDLD 240 ADNSLRRAIW VDGIAKRNYE LFGEAVAFDP TYSTNKYSMV FTPFTGVDNH KKSVTFCGAL 300 IAKEDFQSFN WVFSRFLIAM GGKEPEYIIT DQDPGIIKSV KHVFKRSRHR FCIWHIMNKV 360 ADKYGAARSD YRDFLAKLNS IVWNEEIDAA EFDHRWLEIM DCHGVGKDDW FADCFSIRNQ 420 WVLAHCKDLR MGSLMRTTQR SESSNSFFKR FEHKSGTLVE FWMRFESAMD QQRHNKKKLD 480 NYNKHSSPKL ITSLKIEDDG LKLYTHEIFK EFQEEVDLSL SKCSIKGYRE ENGEEVSLVK 540 DAIRGLIFEV HFIPDSLEAR CSCTMFERKG ILCRHIISIY TSNGVEKIPT SGVARRWMKE 600 CFVNDGECMK LKELDSTANV DGRHLEMTKL WIEINETVSF LQNVDLKYVG LLFDKLKQFR 660 EEHQCSKETL TKEQQFEKLL GCTVSKEISV MPPKQSKNKG SGKRILSAKS VAISTSSKPK 720 RLCNNCKQMA HHDKRNCPNP FVEKAPISFG DNEGLEDTQD EV

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence Send to blast

MQEIEQLSVI EGTNDVPNVP VIEEGDFCET VEKDFTPFVG QEFISVDEAY SFYRIYALAC  60
GFDVRRYSEK KWDDGTLKTK LIVCNREGIY RPNSKDVEEE NSADKRSRRT TVTPIGCKAR  120
IRLFLFKGVL KIDRFVAEHN HELVTVENRE FQKLSSSLSE YHKFFIVSNM RLNIGASKTY  180
RMMKEYVNGY ENIGASLNHF KNFQRDIKCF IHERDGQLFV DRFKVMGENK ADFYFDYDLD  240
ADNSLRRAIW VDGIAKRNYE LFGEAVAFDP TYSTNKYSMV FTPFTGVDNH KKSVTFCGAL  300
IAKEDFQSFN WVFSRFLIAM GGKEPEYIIT DQDPGIIKSV KHVFKRSRHR FCIWHIMNKV  360
ADKYGAARSD YRDFLAKLNS IVWNEEIDAA EFDHRWLEIM DCHGVGKDDW FADCFSIRNQ  420
WVLAHCKDLR MGSLMRTTQR SESSNSFFKR FEHKSGTLVE FWMRFESAMD QQRHNKKKLD  480
NYNKHSSPKL ITSLKIEDDG LKLYTHEIFK EFQEEVDLSL SKCSIKGYRE ENGEEVSLVK  540
DAIRGLIFEV HFIPDSLEAR CSCTMFERKG ILCRHIISIY TSNGVEKIPT SGVARRWMKE  600
CFVNDGECMK LKELDSTANV DGRHLEMTKL WIEINETVSF LQNVDLKYVG LLFDKLKQFR  660
EEHQCSKETL TKEQQFEKLL GCTVSKEISV MPPKQSKNKG SGKRILSAKS VAISTSSKPK  720
RLCNNCKQMA HHDKRNCPNP FVEKAPISFG DNEGLEDTQD EV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-75	FAR1-related sequence 5