PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca58184.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 694aa    MW: 77442.2 Da    PI: 4.9461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca58184.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.2e-12640689146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 
                      r++W+  E++ l ++v+++G++ Wk+I          +gRt+ ++k++w++
       Dca58184.1 640 RKKWSSLEEDMLREGVQKYGKR-WKLILTDSKyvkifEGRTDVDLKDKWRN 689
                      789*******************.***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.899635694IPR017930Myb domain
SMARTSM007176.5E-8639693IPR001005SANT/Myb domain
PfamPF002491.8E-9640689IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-12640692IPR009057Homeodomain-like
CDDcd116606.00E-14641692No hitNo description
SuperFamilySSF466891.79E-10642692IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MEETIAKWII EYFLRRRSDD KVINALISSL PLAVDDYRLK KTMLLHRIET EASKGWISEK  60
IVELIEIIEA LDHEEGKMAS ELMKTAYCLV AVDCTVRFLV QTGEKNEKYL EAVENLWRNR  120
VCKSAGLVSE MSKRWFDDIE AAGNDSAVRE KLWMRNTRNE AMKAVIEYVK EQWECLGPTF  180
LEVVAAKVGD DVEGTWLNDG DRGVYGGGSQ QGQPVVRRKH LAVKTKRPRG ARLSDVEEEA  240
VNTTGDGITE TEGAKFPSLS SEMDKAKEAI CTGFAAETRD IRGEKRSDVD GDTMNKAGDS  300
TAETVRAEDR TPEINRAKET SSSGFTQGPS VGGRVVDGVR TAQTLTFMTP LHRGVDGDVE  360
AEQNRRVIDD SLEVKMQQRE LRERTRELLA AVCDPLPEAL KTAQTCISLT ETNNHETAPQ  420
NRVEPDMPTS AEAVRVQTAQ EPAETTISNS ENNAEVSKQA GREVDPPRGS AEDGSGNVKE  480
TARHDDADED VTVNLVAQIN LRKRKNVDAP SDPNEKGSVD GTSCTLNEDA QGNVTQIPEA  540
QNNVHKRAKV DAASRGSDEN VAVHEDALGN AAQDPPGAQD NARKRSLMEP NDTSHTFEWD  600
DDIENSAGSP VRPTLPTPNV QRVSPLRVPE YRNLLRRRER KKWSSLEEDM LREGVQKYGK  660
RWKLILTDSK YVKIFEGRTD VDLKDKWRNM SRHS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-19TRF-like 5