PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca58204.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HB-other

Protein Properties

Length: 441aa MW: 50235.6 Da PI: 6.7663

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca58204.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.1	5.5e-12	13	51	19	57
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 F+ ++yp+++ ++e+A l+Lte+qV+ WF+ rR k+k+ Dca58204.1 13 FADHKYPTESLKAEMAITLNLTEKQVSGWFCHRRLKDKR 51 899**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.4E-4	6	56	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.5E-11	13	51	IPR009057	Homeodomain-like
CDD	cd00086	3.55E-9	13	51	No hit	No description
Pfam	PF00046	2.1E-9	13	51	IPR001356	Homeobox domain
PROSITE profile	PS50071	12.536	13	52	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.22E-10	13	61	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MLTKLHVPPA IPFADHKYPT ESLKAEMAIT LNLTEKQVSG WFCHRRLKDK RLAKQLEQQG 60 PGRQDLSSGI IQDRGSGLKQ DSCSSTKQAD YKRVDPREVE SQRYCHENLP VAEPIIQQRS 120 NDDGTEMDDT SSESNSPVQE SFYPQKNSHL IAETTEYRTS NGFVQHNRGR VGPSGYLKIK 180 GQTENAAITA VKRQLGRHYR EDGPSLGIEF DPLPPGAFEP PCNNIEDDDS YGITEPISLS 240 SRDIAGFHKR PTLGTIRDED TYEAPDNMHM HKSNPHLDKF SFRQPKQRLP FPNHKRGLPD 300 RDSNNDNDHD DNTALPDYDD VHPKVVHRRE QFSSRPGGVG VRHKDPVYKD DRMPSNRIPK 360 DEELYVGRRS TSEFQDSVKP KMRPTNELKA KKRAREEFPE EEHPVRLPQD PILWSKQQKG 420 PKQMPPSSSE DETAETSSSM N

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MLTKLHVPPA IPFADHKYPT ESLKAEMAIT LNLTEKQVSG WFCHRRLKDK RLAKQLEQQG  60
PGRQDLSSGI IQDRGSGLKQ DSCSSTKQAD YKRVDPREVE SQRYCHENLP VAEPIIQQRS  120
NDDGTEMDDT SSESNSPVQE SFYPQKNSHL IAETTEYRTS NGFVQHNRGR VGPSGYLKIK  180
GQTENAAITA VKRQLGRHYR EDGPSLGIEF DPLPPGAFEP PCNNIEDDDS YGITEPISLS  240
SRDIAGFHKR PTLGTIRDED TYEAPDNMHM HKSNPHLDKF SFRQPKQRLP FPNHKRGLPD  300
RDSNNDNDHD DNTALPDYDD VHPKVVHRRE QFSSRPGGVG VRHKDPVYKD DRMPSNRIPK  360
DEELYVGRRS TSEFQDSVKP KMRPTNELKA KKRAREEFPE EEHPVRLPQD PILWSKQQKG  420
PKQMPPSSSE DETAETSSSM N

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673742.1	1e-164	PREDICTED: homeobox-DDT domain protein RLT1
TrEMBL	A0A0K9RSS5	1e-148	A0A0K9RSS5_SPIOL; Uncharacterized protein
STRING	XP_010673742.1	1e-164	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-59	HB-other family protein