PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca58304.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Trihelix

Protein Properties

Length: 454aa MW: 51034.5 Da PI: 6.513

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca58304.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.8	1.6e-19	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 +Wt++ +++Li+++ +++++ + kk++W+ vs+ m ++g+ +sp+qC++k+++lnkrykk++e+ +++t ++++++ ++ d++ Dca58304.1 121 KWTDNVIRLLIAVVASVGDDAVHEVadapkrkfgmlHKKGKWKMVSNIMISKGCCVSPQQCEDKFNDLNKRYKKLNEILGRGTcCQVVENPSLMDSM 217 7***********97776665432234556677779*******************************************758888998888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-17	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MEGSNLGGWF LSGSSGPSLD MEMSLQKRQQ GQMGQPLMTH RTHNFPPLNM VSGLDNEQPL 60 RFGEAKELTL GGMAMDLGKG KGISLGPSCS NNTTSDDEEP SFTEDVNGED GKRKFRWQRM 120 KWTDNVIRLL IAVVASVGDD AVHEVADAPK RKFGMLHKKG KWKMVSNIMI SKGCCVSPQQ 180 CEDKFNDLNK RYKKLNEILG RGTCCQVVEN PSLMDSMPQL TNRAKNEVKK ILSSKHLFYR 240 EMCAYHNGQL IPGCNDVDQQ GHFTTLAAAH SNGNDHSEDH EAERIDESES DDDDSYGIDA 300 EAANRGRVTT DCSKGGLNEG NSGFWPLTDT RGCDNRVETA VTFPDLVKSP AERRAWIQQQ 360 LRQSEEQKVQ LLAESLDLEK QQFKWLRFRS KKDRELQRLR LENEKMKLEN DGNILLLKQK 420 ALHMGIPMSE ISLERTSLSC QGLQGKDETN SVRH

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MEGSNLGGWF LSGSSGPSLD MEMSLQKRQQ GQMGQPLMTH RTHNFPPLNM VSGLDNEQPL  60
RFGEAKELTL GGMAMDLGKG KGISLGPSCS NNTTSDDEEP SFTEDVNGED GKRKFRWQRM  120
KWTDNVIRLL IAVVASVGDD AVHEVADAPK RKFGMLHKKG KWKMVSNIMI SKGCCVSPQQ  180
CEDKFNDLNK RYKKLNEILG RGTCCQVVEN PSLMDSMPQL TNRAKNEVKK ILSSKHLFYR  240
EMCAYHNGQL IPGCNDVDQQ GHFTTLAAAH SNGNDHSEDH EAERIDESES DDDDSYGIDA  300
EAANRGRVTT DCSKGGLNEG NSGFWPLTDT RGCDNRVETA VTFPDLVKSP AERRAWIQQQ  360
LRQSEEQKVQ LLAESLDLEK QQFKWLRFRS KKDRELQRLR LENEKMKLEN DGNILLLKQK  420
ALHMGIPMSE ISLERTSLSC QGLQGKDETN SVRH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673612.1	0.0	PREDICTED: uncharacterized protein LOC104889964
TrEMBL	A0A0K9RKA3	1e-150	A0A0K9RKA3_SPIOL; Uncharacterized protein
TrEMBL	A0A0K9RLX4	1e-151	A0A0K9RLX4_SPIOL; Uncharacterized protein
STRING	XP_010673612.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	7e-80	sequence-specific DNA binding transcription factors