PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca58361.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 712aa MW: 81971.1 Da PI: 8.596

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca58361.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.4	8.5e-07	75	119	1	46
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 +fY++YA +GF+ r +s+ + + + +++ +vC+++g+r++ +k Dca58361.1 75 SFYKAYAFACGFTPRLYTSRLR-KCRVLKNKILVCNRQGFRKNPQK 119 5*************998876.677799**********99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10551	3.0E-29	265	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.596	537	573	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.6E-7	546	570	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-5	548	575	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence Send to blast
MIDSQPQNDD TISGFKSGQS VPLTPTKQSV PSIPGQYPLV LSHTPGGSEK CVRRVEREFM 60 PTVGKVFPSL DEAISFYKAY AFACGFTPRL YTSRLRKCRV LKNKILVCNR QGFRKNPQKL 120 RDPCAYDLNK VVGFHESHNH RLSSANERDF EKVSRNLTLF YKQLIVDHLK LNIGASKSFR 180 ICKEYVNAYS NVGASLLDFK NFQRDIKCFI GEKDAQLFID RFQMMSESKR GFFFSYHVDD 240 STSLSRVFWS DVEAIRNYSL FGDAISFDPT YGTNKYSMVF TPFTGVDHHT KSVFFGACLL 300 SNEDENSFRW CFEKFLEAMG QKEPQIIITD QDPAINKDVQ FAFVKVRHRF CIWHIMEKLN 360 DKVGSSICRD TDFLSRLNSI VWDAXXXXXX XXXXXXXXXX XXXXXXXXXX QKWIQVINDF 420 GMGDHSWLSS MFSLRNFWIP AYHRDLPMGC ILRTTQRSDS QNSFFKRYEN HFGTLVEFWM 480 SPLTLESHAA RVYTHPIFYE FQEEVKASIS SCSVTGFTKH NEEERMDVED AERNKTYQVL 540 FNVTTKDASC TCKLFERKGI LCRHVIWVYS VEDNDANPQT HLAKLWSEIH ATVSLLKTLP 600 NIHTQELCGF LVQFREGICP KAQDLTKEQE LEMLLGCSSS STISILPPSK SNNKGSGKRL 660 ISTKAQCIEK AEKPKRLCAY CKEMGSHDRR NCAVRIADET AAKKKKQSTL ML

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence Send to blast

MIDSQPQNDD TISGFKSGQS VPLTPTKQSV PSIPGQYPLV LSHTPGGSEK CVRRVEREFM  60
PTVGKVFPSL DEAISFYKAY AFACGFTPRL YTSRLRKCRV LKNKILVCNR QGFRKNPQKL  120
RDPCAYDLNK VVGFHESHNH RLSSANERDF EKVSRNLTLF YKQLIVDHLK LNIGASKSFR  180
ICKEYVNAYS NVGASLLDFK NFQRDIKCFI GEKDAQLFID RFQMMSESKR GFFFSYHVDD  240
STSLSRVFWS DVEAIRNYSL FGDAISFDPT YGTNKYSMVF TPFTGVDHHT KSVFFGACLL  300
SNEDENSFRW CFEKFLEAMG QKEPQIIITD QDPAINKDVQ FAFVKVRHRF CIWHIMEKLN  360
DKVGSSICRD TDFLSRLNSI VWDAXXXXXX XXXXXXXXXX XXXXXXXXXX QKWIQVINDF  420
GMGDHSWLSS MFSLRNFWIP AYHRDLPMGC ILRTTQRSDS QNSFFKRYEN HFGTLVEFWM  480
SPLTLESHAA RVYTHPIFYE FQEEVKASIS SCSVTGFTKH NEEERMDVED AERNKTYQVL  540
FNVTTKDASC TCKLFERKGI LCRHVIWVYS VEDNDANPQT HLAKLWSEIH ATVSLLKTLP  600
NIHTQELCGF LVQFREGICP KAQDLTKEQE LEMLLGCSSS STISILPPSK SNNKGSGKRL  660
ISTKAQCIEK AEKPKRLCAY CKEMGSHDRR NCAVRIADET AAKKKKQSTL ML

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-69	FAR1-related sequence 5