PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5850.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 449aa    MW: 50948.9 Da    PI: 6.941
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5850.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.93.3e-18108191190
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                +fY++YA+++GF++r++ +k++  +g    +t vC+k+g+ + + +      ++r++tr gC+a++  k+ ++g+++v+k+++ HnH+++
  Dca5850.1 108 EFYSSYATTCGFTIRREGEKRN-AKGIPSYKTCVCNKQGEGKAKGRM-----KKRQVTRQGCEACVCFKMVENGEYMVYKFVEAHNHPMM 191
                6****************99998.7777999**********9998877.....999********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-14108191IPR004330FAR1 DNA binding domain
PfamPF105515.1E-27313407IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MESTKEDRSK AIVPFTGIQD TMMTDVSNTE TESTNAMEAT DCVGSCSAND KDTPQRDADS  60
PTVPFENQTA ANSPESTATT SCDGVPYCRD ELKPVVGKKF ASLEQGIEFY SSYATTCGFT  120
IRREGEKRNA KGIPSYKTCV CNKQGEGKAK GRMKKRQVTR QGCEACVCFK MVENGEYMVY  180
KFVEAHNHPM MTPTTMVHLK SGRELNVVHK KMIIENSRVN HGPVKTFRMF KEYVKGYNNI  240
GASLQDFKNF SRDVKKFLKE YDAQMMIETF IQKRAMCPSF YFDFDVDEDQ KLTKLFWADP  300
ISIKNYALYG DSCSFDTTFD FNKYKMVFAP FTGVDNHKRC VTFGAGLISK EDADSFSWLF  360
ENFLKAVGGC YPTTLITDQC LGIKAGVNKV FSDKTHHRYC MWHITKKMPE KVGASVSRDT  420
DFLKEISAII WGDDVDIEEF EAEWKKIVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668319.11e-127PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_010668319.11e-127(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-58FAR1-related sequence 5