PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca58531.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 274aa    MW: 30175.9 Da    PI: 6.132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca58531.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-123573244
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44
                r +h+e E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L
  Dca58531.1 35 RSKHSETEQRRRNKINERFQLLRELIPPN----DQKRDKASLL 73
                899*************************9....8999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-123074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.94E-103173No hitNo description
Gene3DG3DSA:4.10.280.105.7E-133175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.6373383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-103573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNRTSNHHDD DDDGGTDTSS HREGKSAERK PSSNRSKHSE TEQRRRNKIN ERFQLLRELI  60
PPNDQKRDKA SLLLERASHA PVDNFDNHSQ AVNNGSLDED NITQQLTSTH GSLETEFSRE  120
FAYRGDDLLA EPMTPTIPFG VPFQSGGFGP GRGILQTENL VSHPHFSSIA ECSVLEKEGK  180
ACESRSSSIS DIYSQGVLKK LTQALQTSGV DLSQANISVQ LDVGKHKNNG SVAVATTEDV  240
DNRSLTSQAK SHSVDLRANE PVQAVKRFRV GETE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021736897.11e-103transcription factor BIM2-like
TrEMBLA0A0K9R0G21e-98A0A0K9R0G2_SPIOL; Uncharacterized protein
STRINGXP_010694243.13e-97(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-25BES1-interacting Myc-like protein 2